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http://www.1000genomes.org/wiki/Analysis/Variant%20Call%20Format/VCF%20(Variant%20Call%20Format)%20version%204.0/encoding-structural-variants
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``` // GATK_SELECT_VARIANTS__INTERVALS(GATK_INDEX_FEATURE_FILE.out, params.drgenes_list)``` in the CALL workflow is not yet enabled, is the ``` -L ${intervalsFile} \\``` available yet? Or should I cr…
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Dear All,
I had read a paper entitled "A pangenome analysis pipeline provides insights into functional gene identification in rice". A very excellent article for pangenome construction in rice, I a…
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**Describe the bug**
I suspect CRISRPme is occasionally reporting off-targets generated by indels that are False-- i.e. that are not actually generated by the reported indel
As part of an analys…
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Hello, I am trying to align metagenomic sequences, when I run initPipeline with the following command I get the expected output:
`initPipeline -q -1 Unmapped.out.mate1 -d projectDir -i 300:800`
Pr…
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~~Please add a column in the dashboard download file that includes the URL link to the curation in the VCI/GCI~~ Released 12/18/2023
Other requests:
1. ~~Please add a column with the CAID in the d…
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Currently we have pages for specific variants, but if you want to find variants of interest, you are restricted to either (1) autocomplete searches on label or (2) finding another entity of interest (…
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Hi,
If I have a series of interchromosomal translocation events stored in .vcf file, can I construct a graph that represent this kind of variants using vg ? If vg cannot solve this problem, can o…
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Dear SAIGE developer,
We had run gene based SAIGE test on a small set of case control exome seq sample(137 case vs 681 controls) rare variants(MAF
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## Tasks
1. all PCGs BLAST all-vs-all search - diamond.py
2. gene sets construction
3. real alignments to respective sample contigs specific to gene coordinates
4. module detection of coverage-c…