-
**Are you using the latest release?**
`funannotate v1.8.11`.
**Describe the bug**
funannotate test is failing at the predict step with error "Not enough gene models 175 to train Augustus (200 re…
-
Should be a program for that...
sr320 updated
4 months ago
-
I run biser to identify SD using soft-hard genome and think the results are too high. But I don't know how to filter out my result data.
-
Hello,
Is the default masking method "Tantan" suitable when giving a RepeatModeler-created repeat library?
Thanks,
Magdy
-
### Description of the bug
Dear all,
Thanks a lot for this wonderful tool.
I am processing shallow coverage WGS data with oncoanalyser through nf-core and experiencing an issue at the GRIDSS st…
-
Matthew:
Thanks as always!
I think it useful to have the discussion in the Google group (I find I use it quite a lot). So I will follow up here and submit a bug report.
#####
Version = si…
-
The command for specific species doesn't work
```
--rm_species fungi
```
```
Species "fungi" is not known to RepeatMasker. There may
not be any TE families defined in the libraries for this
sp…
-
for a line like
```
NC_035785.1 10691 10693 100.000000 NC_035785.1 RepeatMasker similarity 10557 10727 27.3 - . Target "Motif:BivaMD-SINE1_CrVi" 147 336
```
I want to pull out `Motif:BivaMD-SI…
sr320 updated
8 months ago
-
Hi there! I am planning to run SoloTE on publicly available data (HTAN). I can either download raw FASTQ files and align them to the genome myself, or use the pre-aligned BAMs provided by HTAN. I want…
-
When I run the program EDTA, an error occurred during the initial process: Invalid value for shared scalar at /lustre/home/huli/micromamba/envs/edta/share/LTR_retriever/bin/LTR.identifier.pl line 114,…