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I annotated a version of Brucella BO2 in RASTtk in PATRIC and it called a very strange gene. Starting sequence is G. This shouldn't be happening
### Other Linux
ubuntu 18.04
### Workflow Version
v2.9.3-g6636bc9
### Workflow Execution
Command line (Cluster)
### Other workflow execu…
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I am having an issue with running SPAdes assembly on an eukaryotic genome ~25Mbps. Here is the error:
```
== Error == system call for: "['/.../SPAdes-3.13.1-Linux/bin/spades-core', '/.../SPAdes_r…
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Hi,
I appear to be getting the following error when running the following command hybracter test-long which I presume is related to medaka. I wondered if you have encountered this issue before and …
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input：`!python run_Speed_up.py --contigs ComND.Sep_nonredundant.fasta`
outputs：
folder pred exist... cleaning dictionary
Dictionary cleaned
Creating Diamond database...
diamond v0.9.14.115 | by B…
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Multiple sequence alignment would definitely be a huge asset. When I worked on metagenomic sequencing data I would be aligning 1-2 hundred thousand contigs (each about 300-600 base pairs).
(Btw, on…
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Hi,
First of all, thanks for developing this tool!
I have a few metagenomic samples from which I've estimated the number of couple of reads mapping in proper pair to the SSU rRNA genes present in …
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Hello Benjamin,
I have two questions for you regarding the prevalence function in Decontam at ASV level.
QUESTION 1:
I assume that the control samples should be the same (resemble each other …