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hiii
I was trying to install transposon_annotation_tools. During installation I am getting an error : " Output in format: Requested package -> Available versions". kindly help me to resolve the issu…
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Hi!
I am analyzing results from virusbreakend and noticed that the number of integrations in the summary output is different than that in the VCF. For example, the summary reported 57 integrations …
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Dear Shujun,
I have encountered a problem with the LTR_retriever program, and Robert @rmhubley pointed out it is related to data passing in a multithreaded run. According to my sight, it is widely …
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**Are you using the latest release?**
`funannotate v1.8.11`.
**Describe the bug**
funannotate test is failing at the predict step with error "Not enough gene models 175 to train Augustus (200 re…
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Dear RepeatMasker friends,
We are having an issue with RepeatMasker never ending the postprocess.
We are working with an assembly that contains chromosomes that are above 1 Gbp and I am wondering…
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Hello,
I would like to request the installation of RepeatModeler (https://github.com/Dfam-consortium/RepeatModeler, http://www.repeatmasker.org/RepeatModeler/) and RepeatMasker (https://www.repeatm…
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I cannot install RepeatMasker via conda. I used commands from [this web page](https://anaconda.org/bioconda/repeatmasker). Commands, stdout and stderr are listed below.
```
(base) me@server:~/dir$…
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Hi there,
Thanks very much for creating this software, I have been enjoying using it.
I have my counts table and have been conducting some differential expression analysis using edgeR and I have…
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**Feature request description**
Options line for these two programs, especially to allow control of RNG seed for repeatability
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Hi,
I'd like to try mcmc-date, but when I run `step4-mcmcdate` it seems like that there's something wrong with my `ghc` that I recently installed:
```
./step4-mcmcdate -f step4-strassert.conf -…