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我已经跑完流程，得到了raw_matrix文件夹，我现在想自己进行从头的质控以及后续一系分析。但是我是进行了很多尝试使用 scanpy 读取总是会报错？不知道是否支持？
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I have snRNA-seq dataset from literature called sc in S4 Seurat.
I converted it to SingleCellExperiment using this function:
sc.sce data->listData-> logcounts
logcounts is a S4 [2000x220170]…
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Thank you for developing this useful package. I wonder how we can retrain SenCID with a new set of bulk RNA-seq data for training? Would it be possible to provide the source code for training the SenC…
zji90 updated
6 months ago
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Re: https://github.com/x-atlas-consortia/hs-ontology-api/pull/138
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Hi,
I am trying to get the celldex::MousebulkRNA-seq() and get the following error. I've tried to run on both mac and windows with the same error. Any advice on how to rectify appreciated.
Error: fa…
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Hi,
I have a mouse bulk RNA seq data, can I use xcell to do immune cell infiltration analysis?
Best,
Honglin
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Hi, thanks for the nice paper and code.
As I understand it, the decoder function reconstructs the bulk RNA-seq input B from X (the predicted cell fractions). The learnt weights of the decoder func…
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Dear EcoTyper team,
Hi, all! Hope you been well and thanks so much for sharing amazing tool.
I was following tutorials using new TCGA data with in-house scRNA-seq dataset.
Initially, I run Tuto…
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Good day,
I am eager to test this excellent tool on our data. I have seen in the tutorial and demo data that the vignette uses only one bulk RNA sample as well as an ST experiment.
Is it possib…
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Hello. Thank you for the amazing tool BayesPrim. I am wondering if I have bulk RNA seq data under A, B, C, and D conditions. But I only have the single cell sequence data under condition A. Can I stil…