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Sub-task of #2
- [ ] 3a. CORTECON
- [ ] 3b. POU3F2 over-expression in neural progenitors (Pearl et al. in press)
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Hi CellChat Team,
Thanks for making this package. My team has found it very useful as we implement it for various datasets. I am wondering if it is possible to coerce bulk RNAseq data into CellChat…
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Good day,
I am eager to test this excellent tool on our data. I have seen in the tutorial and demo data that the vignette uses only one bulk RNA sample as well as an ST experiment.
Is it possib…
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Dear community and Alex,
I will be running alignment for bulk RNA.seq PDx samples (human + mouse). The basic concept that I could gather was, align to human and mouse, this will generate BAM files …
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Hello. Thank you for the amazing tool BayesPrim. I am wondering if I have bulk RNA seq data under A, B, C, and D conditions. But I only have the single cell sequence data under condition A. Can I stil…
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Hi,
great package. I was wondering if this form of batch integration is also applicable to bulk RNA-Seq data. Sure the data is less sparse, but would that be an issue?
Happy about any feedback…
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Dear XZouProjects,
Thank you for providing so great software,I wonder if it can be used with bulk RNA-seq data?
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Issues that came up during the August 2024 training
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The title is the Q really - I have matched spatial transcriptomics data and bulk RNA-seq data and want to deconvolute the spatial data with the bulk data. Is this possible with cell2location or some o…
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**Is your feature request related to a problem? Please describe.**
I want to use omicverse to do Different Expression Analysis, but the species I studied is potato, in R language I made my own orgDB …