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### Description:
Allow Bayesian Tracker to annotate cell cycle stage
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See discussion in #174
How should this handle positions? eg these last examples seem variously sub-optimal
``` r
library("scater")
example_sce
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The default [transport ](https://github.com/MIT-LAE/APCEMM/blob/2b4090404fdb5dbc042f51d5291028555c103b74/examples/Example3_met_input/input.yaml#L101) and [ice growth](https://github.com/MIT-LAE/APCEMM…
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https://doi.org/10.1101/081364
> We show that deep convolutional neural networks combined with non-linear dimension reduction enable reconstructing biological processes based on raw image data. We …
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Hello,
It seems like the calculation of the short axis might be slightly off in some way as it seems to slightly increase (by a factor of 1.1) over the cell cycle which causes problems when wanting…
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As mentioned during the NY meeting:
- R-HSA-71336 (Pentose Phosphate Pathway) currently has input to first reaction as α-D-glucose 6-phosphate(2−) CHEBI:58225 (see R-HSA-70377.5 reaction)
- Corres…
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Thank you for your good work.
I am reproducing your great work.
However, when I ran block 22 of pre-process_generate_object.ipynb, an error occurred because 'Macosko_cell_cycle_genes_human.txt' …
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### What kind of feature would you like to request?
Other?
### Please describe your wishes
Currently, `score_genes()`/`score_genes_cell_cycle()` do not have any examples and specifically no documen…
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Related issues:
- https://github.com/obophenotype/bio-attribute-ontology/issues/323
- https://github.com/monarch-initiative/uphenotizer/issues/1
| affected_entity_1_super | affected_entity_1_su…
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Please find the below recommended updates to the CxG annotations of the Teichmann paper.PMID:34497389CxG annotation update recommendations (existing CL terms):
Author cell label | Author CL match | C…