-
When running the standard build command "kraken2-build --standard --db $DB_NAME" , I keep getting this error:
rsync_from_ncbi.pl: unexpected FTP path (new server?) for https://ftp.ncbi.nlm.nih.gov/ge…
-
This example uses the metagenome signature prepared in https://github.com/sourmash-bio/sourmash-examples/issues/12.
You'll also need to download the GTDB database as in https://github.com/sourm…
-
Hello again, sorry to bother
Found this error running build_kraken.nf, tried 3 times with the same result
_____________________________________________________________________
Apr-10 21:34:56.8…
-
## For `s__Bosea sp902506165` genomes
```
% ../gemella/compare-scaled-1.py *.fna.gz *.fna.gz
Removing query 'GCF_902498905.1_BOS5A_assembly_genomic.fna.gz' from against list.
WARNING: scaled val…
-
-
```
wget ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/254/395/GCF_003254395.2_Amel_HAv3.1/GCF_003254395.2_Amel_HAv3.1_genomic.fna.gz
wget ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/254/395/G…
-
genomad end-to-end --cleanup --splits 8 '/home/wenluyin/GCF_009025895.1/ncbi_dataset/data/GCF_009025895.1/GCF_009025895.1_ASM902589v1_genomic.fna' genomad_output genomad_db
╭────────────────────────…
-
I am getting the following error:
`Genome_genomeGenerate.cpp:217:genomeGenerate: exiting because of *OUTPUT FILE* error: could not create output file ./GenomeDir//chrName.txt`
SOLUTION: check that t…
-
Hello! I tried to run the script for aaftf filter but terminal gave me always the same error:
Running AAFTF v0.5.0
error with url https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/819/615/GCF_000819…
-
Hello,
We are currently trying to run Anchorwave on the huge Axolotl genome (32 Gbp) and we are getting the following error:
Command:
```
anchorwave proali -t 19 -i GCF_000001405.39_GRCh38.p13…