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Hi, I was using the FuSeq_WES module to run the detection of fusion genes (in particular MYB-NFIB and MYBL1-NFIB) in our WES data. These fusion genes are the hallmark of that cancer type. I did not en…
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In the case of fusions, its frustrating to have to arbitrarily assign the variant to a single gene. We should allow for the selection of a secondary gene in the case of a fusion-type variant.
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hey, did "+"represent left side of the parent gene and "-"represent right side?
![image](https://user-images.githubusercontent.com/110949514/187111851-dc4c6a0d-2375-46a1-94b6-14d31f47bcea.png)
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Hello,
I want extract the fusion gene transcricpt sequrnce with the information of two gene name and the breakpoint from star-fusion.fusion_candidates.preliminary file.
I've tried the …
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Hi!
I was wondering if you could enhance the outputs by adding the strand of the gene and the strand of the fusion. Would be a great help.
In the meanwhile I'm left to pulling the reads from the …
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Thanks for developing such a useful tool. I would like to ask if it is possible to
SICILIAN applied to the detection of 10X single-cell transcriptome gene fusion? Can you provide a short example? Loo…
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Thank you for developing such a helpful tool. I would like to try to detect fusion genes using STAR-Fusion on 10X single-cell transcriptome data. The single-cell sample was a bone marrow sample from a…
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Hello,
I've run into an error message when running FLAIR-Fusion on my data and have received the following error message
```python
identifying breakpoint sequence - making sam file
b''
identifyin…
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Hi,
the same issue with gen_fusion_file.jl for csv file preparation while using Julia 0.6 version.
`ERROR: LoadError: UndefVarError: readstring not defined in detect at /home/ubuntu/julia/gen_…
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Hello,
I have an error `Segmentation fault` when I run arriba v2.4.0. I tried to debug with gdb.
Below, you can find all the logs.
```
(gdb) run -x /data/sample.bam -o /data/sample_arriba_st…