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```
skcm_gene
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I analyzed my NGS data using Illumina DRAGEN Bio-It Platform on the AWS Cloud last year. The DRAGEN Complete Suite version I used was 3.10.4a.
Now the DRAGEN Complete Suite version is updated to 4.…
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### Context
A user requested [GSE56080](https://www.refine.bio/experiments/GSE56080).
### Problem or idea
[GSE56080](https://www.refine.bio/experiments/GSE56080) is a Illumina MouseRef-8 v2.0…
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Thank you so much for making this repo. The B allele frequencies and logr values are important features for our studies but the version of our GTC files is 3, which means we cannot get those two featu…
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Hello,
I'm experiencing issues using the tool to download the data here:
https://www.ebi.ac.uk/ena/browser/view/PRJEB29403?show=reads
Here is what I ran:
`python3 EBI_SRA_Downloader.py -ebi PR…
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I' m very interested in your team' s project, but the data I had was seqenced by Illumina HiSeq2000 for per cell.
I read the pipline and found that the folder structure more similar to the smart-seq…
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Hello,
Tb-profiler version v6.2.0 is not reporting "missing positions report" data in the .txt output (default settings). The data is generated in the .json file but in the .txt is transcribed as "…
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Original Publication: https://gdc.cancer.gov/node/977
"The expression data for mRNA and miRNA were batch-corrected to adjust for platform differences between the GAII and HiSeq Illumina sequencers. "…
jjgao updated
2 years ago
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Dear dev community,
Would you consider building a container for [PennCNV tool](http://penncnv.openbioinformatics.org/en/latest/)?
Briefly, it is a free software tool for Copy Number Variation (CNV…
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Hello,
I have been trying to repeat a test run with a stable release 1.3.0. However, I encounter several errors regarding "package not found". Mostly, they are libgcc-ng, libstdcxx-ng, and isa-l. I…