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editor preferred term: Illumina MiSeq Dx
alternative terms: MiSeq Dx
textual definition: The first FDA-cleared next-generation sequencing system for in vitro diagnostic use.
definition source for t…
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Hello,
There are two choices in the configuration presents, "DeepVariant" and "DeepVariantWGS", for glnexus_cli (v1.4.1). They have the same description "Joint call DeepVariant whole genome sequencin…
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Base calling, is the systematic assignment of nucleobases to chromatogram peaks in case of electrophoresis, current changes resulting from nucleotides passing through a nanopore in case of Nanopore se…
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**New term details**
```
Term name - sequencing technology used
Structured comment name - seq_method
Definition - The sequencing method used; e.g. Sanger, pyrosequencing, ABI-solid
Expected value…
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Hi,
I am quite new to the field of metagenomic sequencing and we are starting a new project in our lab and want to use your pipeline to determine if some sub-strains emerge or abolish over time. Or…
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I am interested in calling all the mismatches/conversions in my RNA modification dataset that is generated using Illumina TruSeq protocol (dUTP). I am using the JACUSA2 pileup method for this step. Si…
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Request: Help with Obtaining STAR Alleles from VCF Files (Illumina Short Read Sequencing, Dragen Variant Caller)
Hi,
I’m looking to get STAR alleles for a set of VCF files generated from Illumina …
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I have been looking at this paper using miniBarcode:
Srivathsan *et al.* (2019) Rapid, large-scale species discovery in hyperdiverse taxa using 1D MinION sequencing
https://doi.org/10.1186/s12915-…
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- Whatshap - 1.7, Python - 3.10.8
- Conda
- Which command-line parameters you used
- whatshap haplotag -o haplotaggedchr22.bam --reference Homo_sapiens_assembly38.fasta --region chr22 phased.vcf.…
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Good morning,
We have been using the Clonmapper protocol and we are at the stage of testing our barcode diversity after electroporation. We did a 138M reads sequencing and unfortunately our diversi…