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Hi! I am fairly new to the Scenic plus tool. I have been able to successfully install and get the snakemake workflow running. I have been working with non multiome data. My workflow runs just fine unt…
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This is the data format required for an entry in the submission portal:
```js
{
// Currently this holds a string like "soil", "soil_jgi_mg", "air", etc that is the name of a
// class in the …
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Thanks and regards as ever to the devs.
I'm considering several sets of 'omic data generated from the same cohort of ```FASTQ``` files (i.e. taxonomic, pathways, etc). The way of the CoDa seems a …
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Hello,
Thank you for this tool. I am excited to try this on my multiomics data. I have run all steps smoothly until build_grn. Even build_grn step didnt produce any errors and completed successful…
momur updated
10 months ago
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The issue is to request the addition of three new clinical edge attributes to Biolink model. These were standardized across the clinical KPs (COHD, Multiomics EHR Risk Provider, ICEES KG) and will be …
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There is an API which allows to easily retrieve pre-calculated tags of PubMed papers, with extracted bioconcepts including gene, chemical, disease, mutation and species:
![Screenshot from 2020-06-1…
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Hi,
I am currently trying to combine my processed Visium and scRNAseq data using the multimodal run. Following the tutorial I was able to process the data and was able to see the combine feature (G…
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Hi,
SCENIC+ is a very useful software that has brought new insights to my research.
I downloaded the unpublished version of SCENIC+ around January 2023, but then the hard disk of our laboratory …
AIBio updated
1 month ago
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By March 24 in DEV:
Every KP edge MUST return a `biolink:primary_knowledge_source` attribute. All of the attribute values MUST come from the infores repository: https://github.com/biolink/biolink-…
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* openOmics version: 0.8.8
* Python version: 3.9.7
* Operating System: MacOSX
### Description
Hey, all! I'm a fan of this package and hope to use it within my work. I saw the tests were failin…