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### Description of the issue:
Richelle et al., in a recent [research article](https://www.sciencedirect.com/science/article/pii/S2667237521000850#!) suggested an approach for interpretation of omics …
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Update the following URL to point to the GitHub repository of
the package you wish to submit to _Bioconductor_
- Repository: https://github.com/Vitek-Lab/MSstatsBioNet
Confirm the following by …
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Hi!
I am quite new in PeptideShaker so I am still not familiar with all the available options and more importantly with methods that the program utilizes to do certain things.
Now I'm struggling w…
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This is a list of tutorials that are missing a workflow, if anybody would like to run this tutorial and extract the workflow from their history afterwards and upload it here, this would be a great hel…
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I would like to down-sample spectra in order to know if I am close to reaching saturation of proteins identified in a sample. First I would like to know if this seems reasonable, and if so, what prope…
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Hi all,
I have acquired profile data (MS1 and MS2) on an Thermo instrument.
I have now tested the following two MSPathFinder piplines:
1. Use the raw file as input for pbf generation via PbfGen and…
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Hi @timosachsenberg and @all :
We have been using OpenMS and proteomicsLFQ to perform LFQ-proteogenomics analysis of public proteomics data. We have used and stringent FDR at the peptide level to …
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the command:
`bash arc-validate.sh -p /arc/cmqtl_val1_arc -v` inside the docker container gives me this error message
```
+ arc-validate -p /arc/cmqtl_val1_arc -v
Internal Error: …
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Dear statOmics Team,
Thank you for the great msqrob2 package. Msqrob2 is built for proteomics experiments but seems to be a powerful tool to analyze my metabolomic data. I am currently using your c…
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# Abstract
Unipept is an ecosystem of tools for the taxonomic and functional analysis of (meta)proteomics datasets. The Unipept project aims to be an easy-to-use and very accessible tool by providing…