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Hi @timosachsenberg and @all :
We have been using OpenMS and proteomicsLFQ to perform LFQ-proteogenomics analysis of public proteomics data. We have used and stringent FDR at the peptide level to …
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Proteomics:
- [x] Send demonstration for SPPCA @austinTalbot7241993
- [ ] (stretch) Follow Eric Dammer's pipeline @akotlar
- [ ] (stretch) Replace Eric Dammer's network analysis with SPPCA and compa…
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Hello all. I was getting the rather vague error
```
Problem opening mzml file spectra/Ctrl1_5min_total.mzML; One or more errors occurred.
```
When I re-converted my files using different settings…
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In the following issue #671 we discussed the major changes for SDRF specification during the next release 1.1. One of them, is the extension of SDRF for metabolomics.
> **GOAL**: The aim of adapti…
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For starters, something like this:
```
{
"accession": "QC:4000257",
"name": "Detected Compounds",
"value": 57
}
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Dear statOmics Team,
Thank you for the great msqrob2 package. Msqrob2 is built for proteomics experiments but seems to be a powerful tool to analyze my metabolomic data. I am currently using your c…
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# Abstract
Methods to represent multiple spectra
Spectral library searching offers a sensitive yet fast method to match spectra from mass spectrometry-based proteomics experiments. The techn…
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It would be nice to have links to the most relevant repositories and resources related to `sdrf-pipelines` in the `README.md`. e.g. to the https://github.com/bigbio/proteomics-metadata-standard repo.
…
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Hi all,
I made a pull request with three exemplary annotations for MSI data to start a discussion: https://github.com/bigbio/proteomics-metadata-standard/pull/450
Here are some thoughts about t…
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Hi!
I am quite new in PeptideShaker so I am still not familiar with all the available options and more importantly with methods that the program utilizes to do certain things.
Now I'm struggling w…