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- [ ] Datasets
- [ ] AlphaFold 3 PDB dataset
- [x] PDB mmCIF filtering script (`scripts/filter_pdb_mmcifs.py`)
- [x] Fix periodic residue count-chemical component coun…
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### Description of feature
Hello, thanks for the great work with this pipeline. I would like to try to use this pipeline to call somatic mutations in single cell rna-seq data. I have my own WGS refer…
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Hello!
I'm trying to run a bulk RNA-seq analysis using the following template:
```
# Template for human RNA-seq using Illumina prepared samples
---
details:
- analysis: RNA-seq
genome…
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**Question**
We are comparing different aligners and quantifiers to see their impacts on the same RNA-Seq raw data. Of course, it took long time to run one run. My guess is that we do not have to r…
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### Steps
- [x] Export barcodes in right format
- [x] Run [subset-bam](https://github.com/10XGenomics/subset-bam)
- [x] run VBC RNA-seq pipeline
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Hi,
I'm using drop 1.3.3 in order to do aberrant expression analysis. However during outrider execution with 2 bam data and 9 external counts, I'm getting the following error:
```
[Tue May 30 16:…
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This pipeline uses an expression matrix produced by microarray or RNA-seq analyses. As a starting point, we provide an expression matrix for Arabidopsis
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To connect the PASS1B-06 DEA results data to the phenotypic data, we need to map each unique `feature_id` (present in the DEA results) to a list of associated `vial_label` (present in the phenotypic d…
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Experiment Type:
RNA-Seq
Sequencing of total cellular RNA
Workflow Management:
Bash/SLURM
Scripting and job scheduling
Software Stack:
FastQC
MultiQC
STAR
RSEM
samtools
DESeq2
What …
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Create a data migration process that migrates Experiment-specific data to Amazon S3 buckets. The program triggers a data transfer between the local file system and our S3 buckets.
Only data associat…