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**Issue Description:**
I am experiencing a segmentation fault when using STARsolo (version 2.7.11a) to process large single-cell RNA sequencing datasets from axolotl leukocytes. The datasets are pair…
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Hello,
Thank you very much for being super responsive to all github issues.
I successfully followed the Impute genes for MERFISH tutorial. In the tutorial we have 155 genes and use 122 for trai…
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It's a remarkable job you're doing. I would like to be able to analyze my 10X scRNAseq data with SPLASH. Is the run_10X pipeline available now?
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Dear Dr. Li, I have encountered some problems while studying TRUST4 script commands recently. I hope to receive your guidance:
About barcoderep-filter. py, the first two lines of the report. out in m…
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# Single-cell RNA-sequencing Analysis | S_beeni's blog
기초적인 10X scRNAseq data 분석 방법
[https://sbeeniny.github.io/posts/scRNA-analysis-basic/](https://sbeeniny.github.io/posts/scRNA-analysis-basic/)
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Hello, I encountered this error while running CeleScope.
Exiting because of *FATAL ERROR*: could not create FIFO file .//SMA/01.starsolo/SMA__STARtmp/tmp.fifo.read1
SOLUTION: check the if run direc…
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In Bioc release:
```
> library(scRNAseq)
> sce.seger rowData(sce.seger)
DataFrame with 26179 rows and 2 columns
symbol refseq
SGIP1 …
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I am trying to create a custom PoN file by using a following command, however it outputs an error message about 'sort' without generating a PoN file. Could you please advise on this issue.
Command …
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For the deconvolution of my ST data, I want to use my own scRNAseq reference for the normal cell cell fraction. However, I am satisfied with the way that the default SpaCET.deconvolution is determinin…
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sr320 updated
7 months ago