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**DO NOT INCLUDE REQUESTS IN THE FIRST COMMENT.**
**PLEASE POST THIS TEMPLATE UNCHANGED THEN FOLLOW ITS INSTRUCTIONS IN A NEW
COMMENT**
# General Notes
This repository serves as a mostly automated p…
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Hello,
After running your software, I noticed that some beads were classified as originating from the same cell. Could you please explain how this determination is made? Specifically, I'm curious a…
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I am having an issue using Scissor to annotate bulk RNA sequencing (of paired tumor & normal samples) with single-cell tumor sequencing.
Here is my code:
```
## import bulk RNA seq data
bulk…
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### Project short name:
GSE114727_BreastTumorMicroenvironment
### Primary Wrangler:
Ray
### Secondary Wrangler:
Enrique
### Associated files
* Google Drive:
### Published study links
* Paper:…
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Hello,
I've been using [bionode-ncbi](https://github.com/bionode/bionode-ncbi/blob/master/lib/bionode-ncbi.js) to get SRR ids from a `PRJ**` IDs so I don't have to look for each file individually (ex…
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This is usually where we try and insist on the necessary pre-requisites explicitly.
For this lesson it might also be the opportunity for providing links to background material which are needed.
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**Donor inference**
- [Vireo](https://genomebiology.biomedcentral.com/articles/10.1186/s13059-019-1865-2)
- [Souporcell](https://www.nature.com/articles/s41592-020-0820-1)
- [scsplit](https://…
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### Project short name:
Burja_10x_SkinBiopsies
### Primary Wrangler: @anu-shiva
### Secondary Wrangler:
Ida
### Associated files
* [Google Drive](https://drive.google.com/drive/folders/1vBWhUL…
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The scRNAseqSystemicComparison project is ready for Matrix Service.
This is a Barcelona incentive dataset.
Project title: Systematic comparative analysis of single cell RNA-sequencing methods
P…
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Hello. I am trying to apply MultiK to figure out optimal clustering number for single-cell RNA sequencing (about 40,000 ten thousands cells )
Although i run the code with narrow resolution interval, …