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Hi, I was wondering if there's any way to obtain the `l2.M5_50` files by chromosome, or if you could provide the MAF column on which you based these analysis so I can do it myself!
I do not see tha…
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Discussion with Pierre today - we should add more common variables, even if they are not present in all datasets, such as handedness, IQ, years of education.
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Hi,
I'm trying to run PRSice on UKBB BGEN data, and I've noticed that the "Calculate MAF and perform filtering on target SNPs" step is extremely slow, to the point where I've let it run for nearly …
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Dear LCV developers,
We ran three LCV tests to study a relationship between two UKBB traits - varicose (VV, three sets of GWAS data, rg = 0.98 - 1.00) and ostearthritis (OA) - and obtained controve…
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Hi @matteofrigo @rutgerfick
We have been trying to run MCMDI models on UKBB data and we were getting the following error:
```
File "/Users/jvillalo/opt/anaconda3/lib/python3.8/site-packages/dmipy/…
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Dear Developers,
When fitting the null model in step1 using 400K WES data in UKBB, I encountered the following error:
```
Warning: spsolve(): memory allocation failure
*** Error in `/publi…
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Hi,
I tried running the code both on MacOS and Ubuntu, using the official MIRTK docker image as base image. In both cases I get a seg fault error during execution of the average_3d_ffd program. Seem…
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VariantSpark is currently optimised for reasonally small sample sizes (n=100-5000) and large numbers of variants (e.g. 42 million) , ie. 'wide' datasets. Working on phenotypes in UKBB, e.g. CAD we hav…
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Hi~
Can I get the file "w_hm3.snplist.bz2" from the website(https://alkesgroup.broadinstitute.org/LDSCORE/) ?
I couldn't find it on this website. Maybe, somebody can send me one. Or there is …