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I had done an analyse all and then sorted by relevance. I then changed the gene list and reran. The genes were now ordered alphabetically on the new list. But the drop down still says sorted by releva…
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I tried to `parseVEP` a 800M tsv from all of mouse dbSNP, here:
`/hot/project/method/AlgorithmDevelopment/ALGO-000074-moPepGen/Giansanti_Mouse/processed_data/mpg_snp_indel/VEP/dbSNP150_GCF_000001635.…
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**Describe the bug**
When adjusting the data source weights in the API, it is possible to set a weight over 1. This contradicts the documentation and the calibration purpose of the weight.
**Obser…
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Originally reported on Google Code with ID 131
```
What steps will reproduce the problem?
Enter UDP_2717's phenotype into Exomiser v4.0.1 (but any version will work) with recessive
deleterious varian…
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We are starting to pull data that about 'molecular phenotypes' which inhere in molecular entities, activities, or processes. These include things like variants causing altered altered expression, act…
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Currently, iobio uses a combination of RefSeq and GenCode. Mosaic uses Ensembl. We need to use HGNC.
- [ ] Determine the best set of genes (which must contain HGNC) to be sufficient. Is Ensembl + H…
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Hi,
I've been thinking some more about the attention masking and reading up on the flash attention itself.
If I understand correctly, a custom mask needs to be supplied to the attention to rep…
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Hi
This is a great tool and the compression levels are impressive. I am trying to calculate LD matrix (exhaustive one). with the following settings
```
java -Xms16g -Xmx16g -Xss4m -XX:+UnlockDia…
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Whet the annotated VCF has Mastermind URL in CSQ tags, vcf2db.py throw the following error:
Traceback (most recent call last):
File "/opt/vcf2db/vcf2db.py", line 923, in
impacts_extras=a.…
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Phenogrid has the functionality to compare a set of input IDs against a profile of phenotypes. However, the results are displayed in the order given and are not grouped by taxon or type. For example…