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I defer changing this issue to an epic and adding child issues to the Dev lead for schema 5.1.0. Generally, I prefer to track individual additions and updates, but Visium Spatial Gene Expression creat…
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See [epic](https://app.zenhub.com/workspaces/single-cell-5e2a191dad828d52cc78b028/issues/gh/chanzuckerberg/single-cell/611) description
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QC metrics like
- Mito percentage
- Number of genes
- Sequencing depth aka sum of all expression values per cell
Note that only cell-wise QC metrics can be showed in cellxgene, not gene-wise
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# Context
I was examining RDS datasets in RStudio and noted that the citation references the H5AD dataset version and not the RDS dataset version:
cellxgene@misc[["citation"]]
[1] "Publication: htt…
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# Context
**Note: This is a placeholder epic for Dev to add child issues following an assessment of required changes.**
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See [Update now-obsolete 'native cell' in schema](https://app.zenhub.com/…
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From the CZI website it states that the limitations of R dgCMatrix prevent a seurat object download for the full dataset.
Since there are newer methods to convert large h5ad dataset to seurat obje…
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Currently, we have a few datasets that are extremely large and require large amounts of memory to migrate them. These datasets were introduced to the corpus sometime between schema 4.0.0 and schema 5.…
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Thanks for providing such a useful resource summarizing expression profiles from lungs.
I checked the labels provided on cellxgene, there are several sets of labels. I understand how the author prov…
YOU-k updated
7 months ago
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Add a field to source dataset in the build called CAPLink. Make it always null for now.
Add CAP link as a column on source datasets,
Add a filter "in CAP" with yes/ no values depending on if the s…
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The new indexer should be exposed via a public API, allowing downstream consumers (e.g., cellxgene-census package) to migrate from the Pandas indexer. Suggest that this be a `tiledbsoma` specific API,…