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Hello！Thank you for the tools you developed. When I use a custom database to identify strains, it give these error:
`terminate called after throwing an instance of 'std::runtime_error'
what(): Un…
wsyjh updated
7 months ago
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```
Some stats programs have things like kmer (with -K) reports and probe-id
counting (with -D).
These programs can consume a lot of RAM (>10GB), even with the highly efficient
sparsehash library o…
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```
Some stats programs have things like kmer (with -K) reports and probe-id
counting (with -D).
These programs can consume a lot of RAM (>10GB), even with the highly efficient
sparsehash library o…
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The assembly finished but I got this message:
== ERRORs:
* system call for: "['/Volumes/ExternalHD500/SPAdes-3.13.0-Darwin/bin/spades-core', '/Volumes/ExternalHD500/spades_K21_25_33_55_C1/K55/con…
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Hello!
In the paper, it is mentioned that "The current best assembly spans 15.34 Gbp, while the GenomeScope estimate is 14.1 Gbp (see Supplementary Figs. 21 and 22)". Fig. S21, GenomeScope estimate…
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I'm trying to run this on my computer with a large FASTQ input file, and am running it as a subprocess in Python:
# # Set the desired parameters
kmer_size = 31
genome_size = 2000000000
error_rat…
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```
Some stats programs have things like kmer (with -K) reports and probe-id
counting (with -D).
These programs can consume a lot of RAM (>10GB), even with the highly efficient
sparsehash library o…
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BCALM outputs the simple paths, which means only one of each kmer (not its reverse complement). This should make our graph smaller.
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```
Some stats programs have things like kmer (with -K) reports and probe-id
counting (with -D).
These programs can consume a lot of RAM (>10GB), even with the highly efficient
sparsehash library o…
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Dear,
I am leaving the Nanopore Day in Bordeaux and there Stephen Rudd presented the release of this promising tools.
What should be the size of the training set? Number of reads of the same ref…