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Hi,
I planned to use modkit to calculate methylation entropy, my code is as follow:
```
modkit entropy \
--in-bam ~/nanopore/test.bam \
--base C \
--ref ~/reference/hg38/hg38.fa
```
Well,…
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Hello,
I encountered an error while running f5c eventalign on my Nanopore Direct RNAseq data. The error message is as follows:
```
f5c: src/align.c:457: int32_t align(AlignedPair*, char*, int32_t…
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I could successfully setup buttery-eel on my MacBook Air, which has the Apple M2 chip and is running macOS Sonoma version 14.1.1. Below are the commands I used for the setup:
```
# setup buttery-eel…
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proxies:
- {name: "WARP1",type: wireguard,server: 2606:4700:d0::42aa:6b00:7090:58d1,port: 988,ip: 172.16.0.2,public-key: XXXXXXXXXX,private-key: XXXXXXXXXX,mtu: 1280,udp: true}
- {name: "WARP2…
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Hello,
I sequenced four samples with the Rapid Barcoding kit, and of course generated very little data (3GB), and an extra-run, generated 120 MB.
I basecalled the extra-run using this code:
```…
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# Issue Report
## Please describe the issue:
I am currently analyzing a MRSA Dataset with 24 different samples. And i want to generate a bam file with information about 6mA, 5mC and 4mC modificati…
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# Issue Report
## Please describe the issue:
I am running dorado in an HPC that doesn't allow connection to the outside.
I did download all the models to just have the mall in case I need them …
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Not an issue but a question. Why does dorado correct output FASTA and not FASTQ? I would like to run NanoPlot (or something similar) to get a quality summary from the dorado correct output. I ultimate…
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* link to support ticket: [2024070360000842](https://otrsdict.ugent.be/otrs/index.pl?Action=AgentTicketZoom;TicketID=161110)
* website: https://github.com/nanoporetech/medaka
* installation docs: http…
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Methylframe