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**Dear Panaroo software development team and community,**
I am reaching out with some questions regarding the use of Panaroo that have arisen during my research. Your insights or thoughts on these …
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Hello,
I hope everything is going well;
I am using virtual machine for Ubuntu Mate and I am running STAR aligner, I have 24GB RAM and 2CPU in my virtual machine. I am not an informatics expert s…
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Thanks for this great tool :)
When initializing ReadFish with a reference genome with more than one dot in its name, it fails to validate with error:
For example with genome: GCA_000001405.15_GR…
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Hi
I have been trying for 3 days but still coulnd't get it work on my end. Sorry I have very little knowledge and training in bioinformatics so please bear with me with the basics. I had RNA-seq da…
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Hi Titus,
I am using lca gather to quantify the abundance of a set number of reference genomes I have in a panel of metagenomic datasets (fastq reads). I am then extracting the "f_unique_weighted" …
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### Description of the bug
Dear all,
Thanks a lot for this wonderful tool.
I am processing shallow coverage WGS data with oncoanalyser through nf-core and experiencing an issue at the GRIDSS st…
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Hi,
I'm wondering if there is an easy way to use multi-threading to run TEtranscript. I haven't found any option for that. The counting process is very slow for large RNA-seq files and this would spe…
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Hello,
I am testing `dorado aligner` to carry across methylation tags between bams when realigning mod bams after basecalling. I am using Dorado 0.3.4
```
/gsc/software/linux-x86_64-ubuntu20/…
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This my command :
bismark --genome WholeGenomeFasta/ -1 CRR91_f1.fq.gz -2 CRR91_r2.fq.gz --path_to_hisat2 /public/home/software/opt/bio/software/hisat2/2.2.1/ -
-samtools_path /public/home/software/…
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### Description of the bug
All of a sudden sarek stops launching with the error concerning meta schema. Tried updating nextflow, sarek and re pulling sarek to a fresh user
### Command used and termi…