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#This is the collection of all microbial methylome analysis sources codes.
#(Saved for linking to future publications)
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Hello,
When I run MetaPalette on a even very small dummy dataset with precompiled Bacteria db, it ends with a "Segmentation fault (core dumped)". I tried both Docker version and a local compilation…
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Can the NanoCaller be used to call reads from bacteria samples?
Also in your readme file there is an argument for selecting contig -chrom . If I want to call snps on the whole genome what argument…
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Hello Developers,
Thank you for melon,
I am working on nanopore shotgun metagenomics data and i am using melon.
I want to include fungii and virus genomes as well in the analysis as currently…
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Hi, developer,
Thanks for creating such efficient software. I have used it to find the 16S rRNA hits in my de-novo assembled genome bins. My purpose is to search for archaea and bacteria, so I run th…
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Hi everyone
I'm writing this here in hope that someone will solve this issue as this is already an unsolved issue as per the thread, https://github.com/DerrickWood/kraken2/issues/291
So, I fac…
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I'm following the database installation procedure here to run the pipeline (https://blobtoolkit.genomehubs.org/install/#databases).
I was successfully able to download the nt data. However, the u…
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Dear Ben,
I am interested in comparing my metagenomes to a number of samples from the same biome that are publicly available. My comparison would be in the form of beta diversity estimates and the …
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Hi,
I have run the Classify_bins module on over 100 bins. The output in some of them are correct (as I already double checked with another tool) but at least in one bin that I was expecting a speci…
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Not super-important, but I suggest to rescale the biomass equations so they sum exactly to 1 :)
The one for bacteria sums to 1.03