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*Please include a short description of problem here*
I have been trying to dd cobra package to matlab for quite a long time , i have checked my network settings too but it doesnt get dowloaded , it t…
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I have only both the model.mat and KO script 'Macrophage_KO.m' in the test directory.
PALM(modelDir, "$(joinpath(dirname(pathof(COBRA)), "../test/Macrophage_KO.m"))",
nMatlab=nWorkers, outputF…
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The `[expressionRxns, parsedGPR, gene_used] = mapExpressionToReactions(model, expData);` is giving expressionRxns variable as entirely NaN values. But parsedGPR and gene_used return cell array. The ge…
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Most/All of the tutorials at https://opencobra.github.io/cobratoolbox/stable/tutorials/ are not available because loading does not work or it is so slow to the point of being static (and connection ti…
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Hi there,
I am trying to install cobratoolbox using the following command
"git clone --depth=1 https://github.com/opencobra/cobratoolbox.git cobratoolbox".
However, three folders, binary, papers…
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# [Roadmap]
## 1.6.1
* [x] [**`WikiCSDataset`**](https://pytorch-geometric.readthedocs.io/en/latest/modules/datasets.html#torch_geometric.datasets.WikiCS)
* [x] **`DeepGCN`**
* [x] [`GENConv…
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In the tutorial: [https://opencobra.github.io/cobratoolbox/latest/tutorials/tutorialOptGene.html]
I first have an a problem with the `selectedGenelist` where the first cell is empty. I "resolved" t…
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Hi! I've met a bug when I am running testAll.
Something seems error in line 149 in testFVA.m, which is
assert(verifyCobraFunctionError('fluxVariability', 'outputArgCount', 2, ...
…
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https://github.com/opencobra/cobratoolbox/blob/c72a7bd511f79ebc1b6b1e0421544b22b4a9335d/src/reconstruction/rBioNet/neighborRxn2data.m#L44
This is unclear, since it loads up existing data, instead o…
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If you needed to add a task to the list below, please think about amending the issue template: https://github.com/FAIRplus/the-fair-cookbook/blob/migrating/.github/ISSUE_TEMPLATE/meta-checklist.md
Gr…