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hello,teacher,my result that have a lot SNP loci which the FDR and P-value values are same,i think what one reason is that the genotyping results for some SNPs are consistent,while some SNPs with inc…
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Hi!
I have seen a very interesting reading using enrichplot in [Visualization of functional enrichment result](https://yulab-smu.top/biomedical-knowledge-mining-book/enrichplot.html#enrichplot) and…
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Hello,
Is there some guidance on when to use the non-default ("k-distance") option for the fdr.weighting parameter in the testNhoods() function? In the "Making comparisons for differential abundance …
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다음을 수행하면 에러가 발생 합니다.
실행:
df = fdr.DataReader('KR1YT=RR') # 1년만기 한국국채 수익률
결과:
HTTP Error 404: Not Found - symbol "KR1YT=RR"not found or invalid periods
몇몇 symbol에서 발생합니다.
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**- Describe the feature:**
Dear author,
Could you please advise where or how I can obtain the FDR information corresponding to each peptide? Also, how can I obtain all unfiltered peptide inform…
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This filter needs a certain level of flexibility for optimisation and visualizaiton - I like the FDR, miscleavage, errors of precursor mass distribution plots for the individual mzid files.
To have t…
Sjan1 updated
5 years ago
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Hi,
I am running the groupNhoods function on the da_results data.frame.
The da_results shows the following
logFC logCPM F PValue FDR …
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### Description of the bug
```
ERROR ~ Error executing process > 'NFCORE_QUANTMS:QUANTMS:LFQ:PROTEOMICSLFQ (PXD002854-serum.sdrf_openms_design)'
Caused by:
Process `NFCORE_QUANTMS:QUANTMS:LFQ:…
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I was wondering if there was a recommended way of using GSEApy when the analysis involves comparing more than 2 sample classes. e.g. control Vs class1, control Vs class2 ..... etc
It would be quit…
Tomnl updated
2 years ago
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I am applying your [workflow](https://bioconductor.org/help/course-materials/2017/BioC2017/Day1/Workshops/Microbiome/MicrobiomeWorkflowII.html#multitable_techniques) to analyze my metagenomics data. T…