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Hello! I tried to run the script for aaftf filter but terminal gave me always the same error:
Running AAFTF v0.5.0
error with url https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/819/615/GCF_000819…
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Multer calls `req.pipe(busboy)` to stream in the request body for processing:
https://github.com/expressjs/multer/blob/07c9e84477e19f6f5016330b0c37c7cfbf085b8d/lib/make-middleware.js#L177
However,…
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Hello,
We are currently trying to run Anchorwave on the huge Axolotl genome (32 Gbp) and we are getting the following error:
Command:
```
anchorwave proali -t 19 -i GCF_000001405.39_GRCh38.p13…
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Hello,
I am using Treeshrink to delete long branch in a SSU phylogeny. It does exactly what i want except that TreeShrink don't remove the species.
I run: run_treeshrink.py -t Constained-tree.t…
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I'd like to understand why kmc gives an empty output for several genomes.
The genome I downloaded and tried to analyze was [https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/067/135/GCF_001067135.1_…
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I am getting error while running:
kraken2-build --standard --db kraken2_db
Error:
rsync: link_stat "/refseq/archaea/assembly_summary.txt" (in genomes) failed: No such file or directory (2)
rsync…
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Hi
I've tried to follow all the steps of the tutorial but I'm facing an issue to download genomes from genbank.
The genbank_accessions.txt file created during the previous step contains GCA_XXX id…
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I can't find the answer anywhere in the documentation. Feel free to point it to me.
```sh
$> serverless
```
```
Your Environment Information ---------------------------
Operating System: …
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Hi everyone,
Just hoping to have a bit of help, trying to install the kraken2 databases (have latest version) but getting the following message rsync_from_ncbi.pl: unexpected FTP path (new server?…
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in `LoombaR_2017__SID1050_bax__bin.11.fa.gz`, we see:
```
breakdown of clean contigs w/gather:
75.29% - to GCF_002159845 s__Anaeromassilibacillus sp002159845
1.56% - to GCF_900104675 s__Ange…