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Hi,
we're planing to set up an instance of MISO in our own sequencing department soon, but amongst others we also have an Illumina sequencer type which uses a different style of [sample sheets](htt…
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I ran jellyfish count on ccs reads produced from PacBio HiFi sequencing as follows:
```
jellyfish count -C -m 31 -s 1000 -t 10 -o marten.pb.jf m64047_240219_192555.ccs.fasta
```
And subsequent…
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Hi,
I am working with a highly heterozygote genome and I wanted to ask if the software is able to tell apart real allelic variation form a sequencing error?
I have illumina reads 2 by 260 bp reads a…
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Hi @clintval,
do you have any plans of supporting the new SampleSheet v2 format?
Seems Illumina has released new tools and along a new version of the Samplesheet.
(https://blog.software.illumin…
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Source: GEO
```yaml
label: GSE70770
title: Prostate cancer stratification using molecular profiles
accession: GSE70770
year: 2015
pubmed_id: [26501111, 26950096]
doi: 10.1016/j.ebiom.2015.07…
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Hi,
I incidentally poked over your project and I wonder why you keep track of `Average read depth` and of `Observed insert size`. The former would be better replaced with `Median read depth` and th…
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Hi, I am trying to simulate sequencing data from my rRACES forest by using the Illumina basic sequencer error. This is my command:
```
rm(list = ls())
library(rRACES)
library(dplyr)
library(ggp…
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Hi,
First,
I am wondering the step:
` Finally, the HiFi and short reads were combined to polish the ONT assembly. `
What software did you use to polish the genome?
Second,
what are the sequenc…
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Heyhey, could you add the following biography to the website? I've also attached my picture to the post.
Thanks a lot!
### Lancelot Seillier, M.Sc.
Scientific Researcher / Bioinformatician
…
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