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cancerit
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BRASS
Breakpoints via assembly - Identifies breaks and attempts to assemble rearrangements in whole genome sequencing data.
GNU Affero General Public License v3.0
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Brass Notation - Understanding Breakpoints
#120
LB1907
closed
2 months ago
2
No data survived filtering
#119
ruolin
opened
5 months ago
0
Security vulnerabilities in current container image
#118
verdurin
opened
1 year ago
0
Iterations must be a positive integer: 0 at /opt/wtsi-cgp/bin/brass.pl line 83.
#117
DingTin
opened
1 year ago
2
What kind of file does the parameter "-d" require?
#116
DingTin
closed
1 year ago
0
No read groups listed
#115
bettinabudeus
opened
1 year ago
0
Poor inversion recall performance in BAM files with a high amount of variants
#114
Rapsssito
opened
1 year ago
3
Poor perfomance in sparse BAM files
#113
Rapsssito
closed
1 year ago
0
Any way to ignore PL in bam?
#112
anoronh4
opened
1 year ago
4
Should be an existing file
#111
mdbarnesUCSD
opened
2 years ago
1
getting POS of 0
#110
anoronh4
opened
2 years ago
7
Regions of excessive sequencing depth for hg38
#109
zhujack
opened
2 years ago
1
Docker/Singularity quay.io not found
#108
mdbarnesUCSD
closed
2 years ago
2
Question: Does BRASS support exomes?
#107
anoronh4
closed
2 years ago
1
less *.ngscn.segments.abs_cn.bg | cut -f1 | sort -u 1 2 3 4 5 6 7 8 9 X Y
#106
jsmedmar
opened
2 years ago
3
duplicate records for inversions
#105
sb43
opened
2 years ago
0
Bedtools problem with get_rg_cns.R
#104
jsmedmar
opened
3 years ago
0
how to optimize performance
#103
anoronh4
closed
3 years ago
4
Issue with creating tmp directory
#102
anoronh4
opened
3 years ago
0
centromere telomere file
#101
mjko1210
closed
4 years ago
4
Performance improvement - input step
#100
keiranmraine
opened
4 years ago
0
brassI_prep_bam.pl - fails if RG ID is last element of header line
#99
keiranmraine
closed
4 years ago
0
Should give 0 exit code when detect previous analysis
#98
keiranmraine
closed
4 years ago
0
Document docker/singularity
#97
keiranmraine
opened
4 years ago
0
Generating an input bas?
#96
cboursnell
closed
4 years ago
1
Error in get_abs_bkpts_from_clipped_reads.pl
#95
udvzol
closed
4 years ago
8
Sequencing protocol - misleading as indicates other than WGS/genomic
#94
keiranmraine
closed
4 years ago
0
Required params not checked
#93
keiranmraine
closed
4 years ago
1
docker container gives errors when run from singularity
#92
cboursnell
closed
4 years ago
1
unused argument (cytoband_file = cytoband_file) - caused by Rlib - gam incompatibility
#91
podro182
opened
4 years ago
4
Readgroup does not exist
#90
podro182
closed
4 years ago
4
Travis CI file needs update
#89
rulixxx
closed
4 years ago
0
Feature/docker
#88
keiranmraine
closed
5 years ago
1
Hotfix/v6.2.2
#87
keiranmraine
closed
5 years ago
1
blatSrc has moved
#86
keiranmraine
closed
5 years ago
0
Sample statistics file is required
#85
kathryn-beal
closed
5 years ago
0
Speedup - input step
#84
keiranmraine
closed
5 years ago
0
Is RC the same as SR?
#83
ggrimes
closed
5 years ago
1
conda installation issues
#82
alongalor
closed
5 years ago
1
Error: Sanger_CGP_Brass_Implement_group.0.err" unexpectedly returned exit value 1
#81
Dorical
closed
5 years ago
5
Fail when RG==0
#80
ym3
closed
5 years ago
1
added fix to skip segments with no mapped reads
#79
sb43
closed
5 years ago
2
bedpe to vcf conversion is not correct
#78
zhujack
closed
5 years ago
1
bedpe ann error
#77
gbnci
closed
5 years ago
10
Blat path not exist
#76
gbnci
closed
5 years ago
0
error and quit for brass run
#75
gbnci
closed
5 years ago
1
depth parameter
#74
gbnci
closed
6 years ago
1
Brass produces output but returns code 255
#73
edawson
closed
5 years ago
9
Clarification: Penalty for finding aberrant pairs for PON separately vs jointly
#72
edawson
closed
6 years ago
1
BRASS filter generation fails with an uninformative error when *.bas not present
#71
edawson
closed
5 years ago
1
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