issues
search
usadellab
/
Trimmomatic
Other
203
stars
70
forks
source link
issues
Newest
Newest
Most commented
Recently updated
Oldest
Least commented
Least recently updated
Differences in trimming between Novaseq and Nextseq outputs
#68
peterashtonEMHP
opened
1 week ago
0
Launch files refactor
#67
zimch
opened
1 month ago
0
Installing
#66
lynneitelson
opened
2 months ago
0
False positive：java.io.FileNotFoundException: /tools/Trimmomatic-0.39/adapters.fa (No such file or directory)
#65
Warelock
opened
3 months ago
0
Not executable - Reg.
#64
bioramg
opened
3 months ago
1
Nextera Adapters sequences.
#63
Kauthar-Omar
opened
5 months ago
0
Potential add on to Log File
#62
AAA-3
opened
5 months ago
0
Error in tempfile()
#61
tdyoshida
opened
6 months ago
0
What's the function of "-validatePairs"?
#60
Siteng999
opened
7 months ago
0
Corrected spelling typos in README.
#59
chime167
opened
7 months ago
0
What is the extra 1 base in the Truseq adapter file (TruSeq3-PE-2.fa)
#58
wjlim
opened
8 months ago
0
ILLUMINACLIP: Unknown Trimmer
#57
RankAma
closed
8 months ago
0
Foward only surviving reads but no reverse only surviving and no dropped reads
#56
Catv97
opened
8 months ago
2
robust fix: build error - old version unsupported
#55
vinarmelin
closed
2 months ago
0
Universal adapter
#54
zivlang
closed
10 months ago
0
installation manual needed
#53
konopinski
closed
10 months ago
1
question about ILLUMINACLIP 2:30:10
#52
scmicrosys
opened
11 months ago
0
Trimmomatic drops 50% of reads
#51
RacheliHadjez
opened
1 year ago
0
fix: build error
#50
starsareintherose
opened
1 year ago
0
Error: Exception in thread "main" java.io.IOException: Stale file handle
#49
FelipeMSD
closed
1 year ago
2
intallation 0.40
#48
DavidGO464
closed
1 year ago
3
Question about dealing with 10x data on trimmomatic
#47
mat10d
opened
1 year ago
0
Trimmomatic parallel de/compression
#46
fgvieira
opened
1 year ago
0
if the adapter.fa is needed and when to set keepbothreads TRUE
#45
taryl
opened
1 year ago
0
Negative Value of "Input Read Pairs" and "Both Surviving" in log file
#44
lxwgcool
opened
1 year ago
2
2nd paired fastq is empty
#43
dmncyap
opened
1 year ago
0
Quality score autodetection fails for Element Biosciences AVITI data
#42
michellescribner
opened
1 year ago
1
paired read assignation
#41
PavelEG
opened
1 year ago
0
Run time error exception occur
#40
GUNAJIV
opened
1 year ago
0
Overrepresented sequences remain after adapter trimming
#39
judy-m2
opened
1 year ago
0
Trimmomatic for MGIseq
#38
SergeyBaikal
opened
1 year ago
0
Suggestion of updates to the README.md
#37
nicolasDelhomme
opened
1 year ago
0
Github CI
#36
bevsxyz
opened
2 years ago
1
Build issue with JAVA Version
#35
bevsxyz
opened
2 years ago
1
Trimmomatic not exiting after job finishes
#34
jesseaiton
opened
2 years ago
0
Multiple Threads
#33
jesseaiton
opened
2 years ago
0
README
#32
akhst7
opened
2 years ago
0
Feature request: exit if adapter file is missing
#31
jdwinkler-lanzatech
opened
2 years ago
0
Support for auto-detect the adapter sequence
#30
gaow
opened
2 years ago
0
No survival & Incorrect input reads
#29
veedeeve
opened
2 years ago
0
Inconsistency between design and implementation caused by misconception about ListIterator's previous() method
#28
zhangzhen
opened
2 years ago
2
trimmomatic does not analyse all fastqs
#27
nana-marinbio
closed
2 years ago
1
trimmomatic does not find adapters folder in coda env
#26
nana-marinbio
closed
2 years ago
1
STDOUT appears to go to STDERR destination
#25
Ghepardo
opened
2 years ago
0
Building on Ubuntu 20
#24
chababster
opened
2 years ago
3
still have N after trimming
#23
silinzhong
closed
2 years ago
0
In what scenarios would you recommend using the SLIDINGWINDOW vs. MAXINFO modes?
#22
lucygarner
opened
2 years ago
1
keepBothReads - should it be "true" or "True"
#21
lucygarner
closed
2 years ago
1
Making a custom adapter file - confused about the sequences to include
#20
lucygarner
opened
2 years ago
9
encouding error on WSL
#19
XiudingCai
closed
2 years ago
1
Next