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Heyhey, could you add the following biography to the website? I've also attached my picture to the post.
Thanks a lot!
### Lancelot Seillier, M.Sc.
Scientific Researcher / Bioinformatician
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Hello, I was exploring this script https://github.com/RCollins13/WGD/blob/master/bin/scoreDosageBiases.R as I would like to annotate my WGS data with dosage bias scores.
I couldn't find the cov.fi…
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Hey
Thank you for this powerful tool!
I've got a question relating to the k-mer matching process. From what I understand, this only relies on exact matching, as opposed to popular alignment tools…
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Hi,
If I called a heterozygous SNP with short read, then phase it with long-read.
But in long-read, at the same position is not a heterozygous SNP,
may be it is a homozygous SNP or no SNP.
What wi…
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What is the role of read quality in alignment. If say I have 2 sets of fastqs. One of them has reads that are 100bp long and have high quality scores. And another has identical sequences but the seque…
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Hi developer,
I came across an issue when I tried to run Canu on the server. Error reported as follow. Any suggestions?
Looking forward to hearing back from you, many thanks!
Wengang
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Hello Tobias,
## Summary
I wanted to propose a new Alleyoop that I would eventually incorporate into a pull request, if you approve of the addition. The idea is for it to take the output of `all…
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Hi Sam
I am looking at your simulator. Your simulation script assumes that there are exactly 4 muxes that are traversed in order to say that a window is a mux scan.
I am wondering how to remove t…
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Hi,
I want to sequence to see differences in the fusion rates. I understand reads need to be paired-end? And what length is advised? Would 50 reads on each side suffice? Or would I need longer reads?…
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Hello!
I wanted to express my gratitude for developing such excellent software! I recently assembled diploid haplotypes using pacbio hifi data, ont ultra long data, and hic data. I ran separate mer…