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Hello,
The same data and script show a significant difference in the number of polyA recognition between 0.4.3 and 0.5.2. Dorado 0.4.3 detected 99% polyA , while Dorado 0.5.2 only detected 20% of t…
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### Describe the bug
Running:
op-reth v1.0.3 (docker image)
op-node v1.8.0 (docker image)
Archive Base Image from:
https://docs.base.org/tutorials/run-a-base-node/#snapshots
I am running in…
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Dear Mitchell,
After running the fiberseq-smk pipeline, I use ft center on my BAM to generate a metaprofile of m6A methylation rates around CTCF sites. However, I have noticed that there are many …
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### Aims/objectives.
We want to assign each dataset in Sci-ModoM a Sci-Modom ID (SMID). Conceptually, this should match some sort of project/study. For each SMID, we can have 1+ EUF/bedMod files.
…
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Hi @mrvollger,
I've faced with a problem during running-smk the pipeline:
```
Error in rule nucleosome:
jobid: 257
input: temp/m64323e_220412_060446_resdir/ft.43-of-80.bam, temp/m643…
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Hi, I try to generate the ROC curve follow with your figure 1d. but I have only result of m6A sites from m6ACE-seq (Downloaded from xPore). Can you point me or suggest the way how to get the result fr…
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Hello CHEUI team,
Thank you so much for developing this wonderful software for the concurrent detection of m6A and m5C modification from nanopore dRNA-Seq. I'm running CHEUI on our in-house dRNA-seq …
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Hello,
I have used m6anet to identified the m6a modification in direct RNA reads of honey bees, and I got I table like this:
![image](https://user-images.githubusercontent.com/33578163/215838597…
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Hi Huanle,
I am just wondering about EpiNano 1.2.
I have run Epinano_Variants.py and the output csv has the following columns:
#Ref,pos,base,strand,cov,q_mean,q_median,q_std,mis,ins,del
Me…
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Hi, I was wondering about the 5 model of epinano that you use to generate the ROC curve. Can you explain the different of Epinano1, 2, 3?.
And I try to generate the ROC curve that I download the m…