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**Bug description**
I am running the pretrained MSA transformer (esm_msa1b_t12_100M_UR50S) on some MSAs with different numbers and lengths to generate the representations. Following the example shown…
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I have obtained some pair MSAs through certain strategies. However, I don't know how to integrate them because the MSAs in the folder are all individual MSAs. Can someone help me
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* 4 Rules of RESTful API : https://sanjimoh.medium.com/grading-your-apis-rest-conformance-7984684430a
* API GateWay
* 인증 및 권한 부여
* 서비스 검색 통합
* 응답 캐싱
* 정책, 회로 차단기 및 Qos 다시 시도
* 속도 …
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As mentioned in #95 we should only focus on datasets that already have a GVPL dataset created
- Once the dataset is created DO NOT retrain on a new dataset, otherwise this will mess up which proteins…
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`make_msa.sh`
```bash
# sequence databases
DB_UR30="$PIPE_DIR/uniclust/UniRef30_2021_06"
```
`DB_UR30="$PIPE_DIR/uniclust/UniRef30_2020_06"` seems to be correct. (ref. Download sequence datab…
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I'm attempting to generate predictions for multimeric complexes, where one chain is a chimeric/fusion protein and has components from different organisms. About ~85% of this chain is from one organism…
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I had a doubt about layers in Swin Transformer. As it is mentioned in the architecture of Swin-T that there are 2, 2, 6, 2 layers at stage 1,2,3 and 4.
What does it mean by 2 layers at 1st stage an…
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https://github.com/brouwern/compbio2021/blob/0056a94236f0f24cc236f89ebfbae8b0d6de9d49/MSA-walkthrough-assignment-part01.Rmd#L388
I've got a question about viewing the MSA. Since I've only been able…
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Hi,
I wanted to generate Distogram and MSA coverage plot for AlphaPulldown. As feature.pkl is not present, I had to modify the AlphaFold plot script to use the result_model[...].pkl from AlphaPulldow…
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