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### Description of the bug
Bug 1: The included nanopolish doesn't included the required HDF5 plugins or VBZ file.
To rerproduce:
When creating a a fresh, base environment and minimal working exa…
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Dear Shian,
Nanopore now suggests using Dorado and Modkit as a replacement for Megalodon for the purpose of methylation calling using nanopore reads.
I like NanoMethViz and would like to use it …
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Hi Rene,
Is there any update converning the conversion from modbam (with MM and ML tags) to meth5 ? The readme mentions that this conversion is not yet operational, and the pysam issue https://gith…
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As the title says, running dorado basecaller (0.5.1) on (multiple or single) pod5 files hangs at 99% completion. The time indicated on the progress bar halts. No errors are output, and operating in ve…
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Looking at https://github.com/rrwick/Basecalling-comparison/blob/master/nanopolish_slurm_wrapper.py there are several improvements that can be made to the polishing. Do we need more options for the us…
Ackia updated
6 years ago
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Hello everyone whenever i run this command this error terminates the command. can someone please guide me
artic minion --normalise 200 --threads 4 --scheme-directory ~/artic-ncov2019/primer_schemes…
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Hi @jts
Is it possible to "nanopolish polya" with guppy 6.0.6 called fastq files?
Or do only albacore basecalled fastq files work with the command?
Seen from the documentation, it seems like g…
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I downloaded data from https://www.ebi.ac.uk/ena/data/view/PRJEB13021 and want to compile the pipeline. Since the whole dataset is too large, I extract 20-30 files from ecoli R7 data for training (eco…
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Hi dear,
firstly thank you for providing Deepsignal. I am wondering how can ı visualize the output of Deepsignal? could you offer any package or guideline in order to visualize the output data? Als…
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Hello developers, thank you for creating the Dorado tool. I have received a lot of help from it.
Recently I've been dealing with my nanopore DRS data, and at this stage we'd like to explore some poly…
x1han updated
2 weeks ago