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The only XDV.1+S:R346T seqs were the N:I292T branch when XDV.1.2 was designated.
However as more seqs are submitted there are many more branches now. Suggest to broaden XDV.1.2 accordingly. @AngieHi…
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Depends on release of https://github.com/nextstrain/augur/pull/1384
Note the new option to use `--metadata-columns` to export metadata without needing to use as coloring in the "What metadata is ex…
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Example: `augur filter --group-by-weights`
Rendered rST docs is formatted nicely:
CLI help text is not great:
```
--group-by-weights FILE
TSV file defining wei…
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Noted by @tsibley in https://github.com/nextstrain/nextstrain.org/pull/862#pullrequestreview-2059192580:
> people without links are shown in a slightly different shade of black. Compare Pavel to Mo…
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Hi folks,
I'd love to know about the current rough timeline for the next SARS-CoV-2 dataset release, if that is possible?
Thank you so much for this!
Ben
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Has Mpox clade I been designated as Clade Ia and Clade Ib? And is this being reflected in the nextstrain? If so, what mutations are considered? Please, assist. Thank.
Walter
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_This was spotted first by @aviczhl2 in the groups (edited)_
Proposal edited by mod on September 14
KP.1.1.1 > S:F59S (T21738C) > S:T22N (C21627A)
Query: T21738C,C21627A,C20104T,-C6701T
Samples:…
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We want to add clickable links into mutation tooltips. These links would lead to the corresponding mutation view in nextstrain.org/ncov colored by the mutated nucleotide.
For example, the mutations…
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The current nextstrain conversion script converts the "nuc" mutations, and ignores the rest. I thought that this was helpfully giving the mutations both in gene and nucleotide format - but I think now…
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### Context
The API endpoints for listing group members were added in https://github.com/nextstrain/nextstrain.org/pull/581 but we have not surfaced it through the group's splash page. I think this U…