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https://twitter.com/lpachter/status/1198730747059691520
>@lioscro has extended it to be able to produce an analysis starting with reads. This means a Monocle 3 analysis can be produced for any datase…
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Hi,
I have been following this tutorial on generating spliced and unspliced matrices for RNA velocity analysis: https://bustools.github.io/BUS_notebooks_R/velocity.html#generate_spliced_and_unsplic…
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### Discussed in https://github.com/aristoteleo/dynamo-release/discussions/423
Originally posted by **Ckenen** September 21, 2022
When I run dyn.tl.dynamics(adata, group="group", NTR_vel=True)…
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Hi,
I have been trying to use LatentVelo with my data. I have managed to install the tool and use it with one example dataset from scVelo. However, when I use it with my data , I run into the follo…
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As far as I understood, to contribute a sfaira data loader the count matrices need to be already publicly available in one way or the other. How would you deal with datasets for which raw fastq files …
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adata_result = mv.recover_dynamics_chrom(adata_rna,
adata_atac,
max_iter=5,
…
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Hi! Thanks for your tool! I want to ask why there is different direction between PAGA graph and stream plot?It is really confused me
![stream plot](https://user-images.githubusercontent.com/61653247/…
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Hello,
Thank you for the well detailed instructions for this they are very helpful. I am rather new to python and I am having a challenging time trying to filter the loom files to match my Seurat o…
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Hi,
I am running RunVelocity function from SeuratWrappers package on some sc data from 10X:
Prol
Execution halted
Does this means that the data is not good enough for estimating RNA velocity ?…