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Hi,
I tried ingest using the reference made with BBKNN. As @ivirshup said, ingest was worked by adding `adata_ref.uns['neighbors']['params']['metric'] = 'euclidean'`. However, the result was quite po…
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### Description of bug
I have an error on Spades 3.15.5 downloaded and installed as Binary from here (GitHub Releases). It is the same issue as reported in #1267. Unfortunately, it is marked as "outd…
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Hi ,
I got an error when I run plot heat map
undefined columns selected
I used the same meta.txt file that I used to run cellphonedb initially so I am not sure why it can't find the columns…
Sa753 updated
2 years ago
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Hi,
Thank you very much for putting together this code.
I would like to better understand when Bulk2Space might help versus when there are limits to applicability to Bulk2Space, following a jour…
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Hi, here. We used the ExpressionSet function to build the input datasets and run the MuSiC. However, there were something wrong.
The single-cell datasets and bulk datasets were as follows.
```
bulk…
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Hi,
It's a nice work! And congratulations to you.
I am trying to run the code in [OSU-BMBL/scDEAL: Deep Transfer Learning of Drug Sensitivity by Integrating Bulk and Single-cell RNA-seq data](ht…
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Hello,
I am trying to perform deconvolution on some spatial data. I have had success running `Giotto::runDWLSDeconv()` previosuly but now I am using a larger signature matrix and it appears that `q…
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Hi,
In your paper ([The single-cell transcriptional landscape of mammalian organogenesis](https://www.nature.com/articles/s41586-019-0969-x#Abs1)),I'm wondering how you make mouse embryos data ba…
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- Make script for figure 3.2 (unique map, multi-map, unmapped) & include discussion of what if too many cells to visualize? -> fit linear or exponential distribution & find outliers
- Discuss Droplet…
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Hello Scissor,
I'm running Scissor, but no matter what alpha I used, it always came out 0 selected cells.
Could you please help me with this issue?
Thanks!
Best,
Yuanjian
```R
infos