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Hi there,
I'm getting errors running VirSorter.
_I run:_
docker run -v /home/vicky/Downloads/virsorter-data:/data -v /home/vicky/virsorter-run:/wdir --rm discoenv/virsorter:v1.0.3 --db 1 --fna …
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An error is being thrown when I specify the output dir when the folder exists.
`DRAM-v.py annotate -i /backup/user_data/linda/f_dynamics/vs2-pass2/final-viral-combined-for-dramv.fa -v /backup/user…
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Hello,
When I was rerunning VS2, which I installed via conda, it ran for several days before spitting out this error message:
`12 merge_split_hmmtbl_by_group
7 merge_split_hmmt…
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Hi Simon,
Firstly, thank you for this tool - it has been of great use in a viral identification pipeline. I had a question about the virome decontamination setting for the CyVerse implementation o…
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Hi,
I tried your tool on one of my datasets where I got viral contigs with Vibrant then I ran VRhyme and compared the results obtained after the dereplication part before or after generating vMAGs.
…
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Hi all,
Does anyone know which output file is the list of hallmark genes in each contig?
Best,
Yuya
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We need to migrate all the assembly and annotation data generated as part of Serratus to our data-lake in a structured way so as to allow for programmatic access. This is a proposed folder hierarchy t…
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Hi,
I wonder where I can access the fasta files of the genomes for the RNA-viruses within Serratus.
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Hi @patrickwest,
did you play with sequence length and have a recommendation for minimum contig length requirements that still allow a confident classification in either euk or prokaryote? Thanks a…
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Gherman, I was wondering - if a viral sequence were present in a sample, would it end up in the cleaned reads (to be sorted out later)? The READ QA folder only contains human sequences pulled out of …