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The guide should contain:
- [ ] Usage with the CLI
- [ ] Usage with our docker image (include the cellxgene VIP extension)
Also we need to
- [ ] Add the corresponding dockerfile to the docker di…
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Hello,
I have had this Seurat object for about a year, and I have not been having any problems until now. Suddenly, when I try to use `LoadH5Seurat` I am getting an error that I do not understand.
…
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Context:
The MVP only renders ~low-res~ (UPDATE (2/29): no low-res support) and high-res, this ticket will enable rendering full res image in the spatial mode
DoD:
1. A user is now able to select ful…
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## Description
It would be convenient if Census contained the organism ontology term ID in the corresponding organism's census object.
## Context
I am building the WMG snapshot from census a…
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Should cover the following topics:
- [x] How to subset to a certain cell type
- [ ] How to handle resolutions and find a suitable one
- [x] How to use marker genes and gene sets
External resou…
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This Epic is an umbrella of work related to increasing robustness of the Census data infra (builder, hosting, deletion, recovery) and to fully integrated with the latest additions to the CELLxGENE Dis…
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## Describe the bug
I'm running into issues with loading some of the libraries required for running Geneformer using the Census model. I installed the required packages listed on the tutorial [Requ…
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We need to create a guide for the experts annotating our datasets anyway, so we might as well provide it to all the users of the pipeline in this repository. Maybe create a "documentation" directory f…
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### Project short name: EndStageHeartFailureSimonson
(~~Ellinor-Human-10x3pv3--2~~)
### Primary Wrangler: Arsenios
### Secondary Wrangler:
### Associated files
* Google Drive: [fo…
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这里记录每周值得分享的生信相关内容,周日发布。
本杂志开源(GitHub: [openbiox/weekly](https://github.com/openbiox/weekly)),欢迎提交 issue,投稿或推荐生信相关内容。
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