-
As visualization is not straightforward we strongly feel that it needs prototyping. Thus, we have decided to implement it as plugin for IGV.
We need to make some architectural decisions, so we need y…
-
Hi,
I installed checkm2 using the yml file, and downloaded the database without issue.
I get the following unicode encoding error in the `testrun`, but also when I try it on a small data (3 genome…
-
Dear all,
Historically, all OXA-258-like beta-lactamases were found in _Achromobacter_ spp., one [paper](https://doi.org/10.1128/jcm.03043-12) considering OXA-258 as a species-specific marker for _…
iorga updated
1 month ago
-
Hi,
The introduction of the Cactus software mentions "It can be used to align hundreds of vertebrate genomes." So, can it be applied to plant genomes?
Thanks so much.
-
From the vignette + documentation, it's not entirely clear to me what the difference between distributed = "genome-wide" and distributed = "single-cell" is. What is changing? I note that for the Seura…
-
**Is your feature request related to a problem? Please describe.**
Update GOTTCHA2 database to use new one that contains fungal genomes
**Describe the solution you'd like**
Copy new database to N…
-
XDV.1+C28657T+C9430T,del21653_21655(S:S31del)
GISAID query: C28657T, C9430T,del21653
No. of seqs: 3(China 1 South Korea 2)
This is the 1st time I see a branch with S31-+S:F456L without R346T or…
-
### Summary
A user wrote in to the forum regarding running FilterSamReads through GATK and the output bam file has formatting issues. After they sent in a bug report, I found that the exit code is g…
-
Dear Professor Hukang,
I am delighted to see that your work has developed a pipeline capable of accurately identifying full-length TEs. I have also been troubled by the overly fragmented TEs annot…
-
The documentation should have a fuller example.
Also, we should make this one-based, because 100% of the time users will have a publication, table, or figure with one-based notation. In any case, the…