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FertigLab
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CoGAPS
Bayesian MCMC matrix factorization algorithm
https://www.bioconductor.org/packages/release/bioc/html/CoGAPS.html
BSD 3-Clause "New" or "Revised" License
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Confusion Regarding patternMarkers Results
#115
mumdark
closed
5 days ago
2
Seeking Clarification on Functions in the CoGAPS Package
#114
mumdark
closed
5 days ago
2
Warning: Large values detected, is data log transformed?
#113
mumdark
closed
2 weeks ago
1
105 refactor patternmarkers
#112
dimalvovs
closed
1 month ago
0
105 refactor patternmarkers
#111
dimalvovs
closed
1 month ago
1
add threshold = "cut" back
#110
dimalvovs
closed
1 month ago
0
fix `threshold="cut"` mode
#109
dimalvovs
closed
1 month ago
0
getPatternGeneSet: replace pathways column with gene.set
#108
jmitchell81
closed
1 month ago
0
getPatternGeneSet gives wrong gene.set names
#107
JamesFrifan
closed
1 month ago
4
commenting GAPSRunner.cpp
#106
ejfertig
closed
2 months ago
0
Refactor - patternMarkers()
#105
dimalvovs
closed
1 month ago
2
Refactor - add comments
#104
dimalvovs
closed
2 months ago
0
102 patternmarkers all returning empty lists
#103
dimalvovs
closed
1 month ago
3
patternMarkers 'all' returning empty lists
#102
kwoyshner
closed
1 month ago
4
Enable the Checkpoints
#101
dimalvovs
opened
2 months ago
2
CoGAPS does not learn to specifed nPatterns when runnign in dsitributed mode
#100
dtatarak
closed
1 month ago
4
Semisupervised CoGAPS
#99
dimalvovs
opened
2 months ago
0
Update DESCRIPTION
#98
dimalvovs
closed
2 months ago
0
Score fill for geneset plot
#97
jmitchell81
closed
2 months ago
0
Too long runtime for GoGAPS R
#96
LiuCanidk
closed
2 months ago
2
default number of patterns
#95
dimalvovs
opened
3 months ago
0
Bump version
#94
dimalvovs
closed
2 months ago
0
Update r-build-check.yml
#93
dimalvovs
closed
3 months ago
0
89 gsora and gsea.
#92
jmitchell81
closed
3 months ago
0
GSEA algorithms for the function getPatternHallmarks
#91
LiuCanidk
closed
2 months ago
9
Confusion on the parallelization of R CoGAPS
#90
LiuCanidk
closed
2 months ago
5
Replace Ensemble dependency and Add overrepresentation and enrichment tests for gene sets in patterns
#89
jmitchell81
closed
3 months ago
0
Error when performing getPatternHallmarks: Error in 'collect()'
#88
LiuCanidk
closed
3 months ago
9
Vignettes fail on querying ENSEMBL
#87
dimalvovs
closed
3 months ago
0
Standard deviation when running distributed
#86
dimalvovs
opened
3 months ago
0
Cpp tests
#85
dimalvovs
opened
4 months ago
0
83 limit number of cores for tests
#84
dimalvovs
closed
5 months ago
0
limit number of cores for tests
#83
dimalvovs
closed
5 months ago
1
enable sparse matrix support when input is object
#82
dimalvovs
closed
5 months ago
1
80 cache downloads for vignette
#81
dimalvovs
closed
6 months ago
0
Cache downloads for vignette
#80
dimalvovs
closed
6 months ago
0
Create r-build-check.yml
#79
dimalvovs
closed
6 months ago
1
change the way pattern name list is generated
#78
jeanettejohnson
closed
4 months ago
3
SparseOptimization pattern discrepancy
#77
rpalaganas
opened
6 months ago
16
fix the check for semi supervised case
#76
dimalvovs
opened
9 months ago
0
Eliminate warnings during build
#75
dimalvovs
closed
9 months ago
4
bioconductor nightly build fails on Windows platform
#74
dimalvovs
closed
10 months ago
7
72 package build fails on master
#73
dimalvovs
closed
10 months ago
0
Package build fails on master
#72
dimalvovs
closed
10 months ago
0
'Error in corcut' after full CoGAPS run
#71
parkerstevenson
closed
1 month ago
4
Atoms and Patterns Stabilization
#70
Jennifer-Foltz
opened
1 year ago
0
checkInputs Warning clarification
#69
Jennifer-Foltz
opened
1 year ago
0
Problem Installing Version 3.18.0 - clang: error: the clang compiler does not support '-march=native'
#68
MedSciMay
opened
1 year ago
2
calcCoGAPSStat missing argument
#67
rpalaganas
opened
1 year ago
0
result interpretation
#66
dm8000
closed
1 month ago
1
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