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FertigLab
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CoGAPS
Bayesian MCMC matrix factorization algorithm
https://www.bioconductor.org/packages/release/bioc/html/CoGAPS.html
BSD 3-Clause "New" or "Revised" License
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init: copy module from co-space
#127
dimalvovs
closed
3 days ago
0
nextflow module
#126
dimalvovs
closed
3 days ago
0
77 sparseoptimization pattern discrepancy
#125
dimalvovs
opened
1 week ago
2
123 test behavior with a matrix fixed
#124
dimalvovs
closed
7 hours ago
6
Test behavior with a matrix fixed
#123
dimalvovs
closed
7 hours ago
0
A test for same results with internal estimation of error
#122
dimalvovs
opened
3 weeks ago
0
119 build container on merge to main
#121
dimalvovs
closed
1 month ago
0
add container build action
#120
dimalvovs
closed
1 month ago
0
Build container on merge to main
#119
dimalvovs
closed
1 month ago
0
116 wrong chisq reported
#118
dimalvovs
closed
1 month ago
2
85 cpp tests
#117
dimalvovs
opened
1 month ago
0
wrong chisq reported
#116
dimalvovs
closed
1 month ago
5
Confusion Regarding patternMarkers Results
#115
mumdark
closed
4 months ago
2
Seeking Clarification on Functions in the CoGAPS Package
#114
mumdark
closed
4 months ago
2
Warning: Large values detected, is data log transformed?
#113
mumdark
closed
4 months ago
1
105 refactor patternmarkers
#112
dimalvovs
closed
5 months ago
0
105 refactor patternmarkers
#111
dimalvovs
closed
5 months ago
1
add threshold = "cut" back
#110
dimalvovs
closed
5 months ago
0
fix `threshold="cut"` mode
#109
dimalvovs
closed
5 months ago
0
getPatternGeneSet: replace pathways column with gene.set
#108
jmitchell81
closed
6 months ago
0
getPatternGeneSet gives wrong gene.set names
#107
JamesFrifan
closed
6 months ago
4
commenting GAPSRunner.cpp
#106
ejfertig
closed
6 months ago
0
Refactor - patternMarkers()
#105
dimalvovs
closed
5 months ago
2
Refactor - add comments
#104
dimalvovs
closed
6 months ago
0
102 patternmarkers all returning empty lists
#103
dimalvovs
closed
5 months ago
3
patternMarkers 'all' returning empty lists
#102
kwoyshner
closed
5 months ago
4
Enable the Checkpoints
#101
dimalvovs
opened
6 months ago
2
CoGAPS does not learn to specifed nPatterns when runnign in dsitributed mode
#100
dtatarak
closed
5 months ago
4
Semisupervised CoGAPS
#99
dimalvovs
opened
6 months ago
0
Update DESCRIPTION
#98
dimalvovs
closed
6 months ago
0
Score fill for geneset plot
#97
jmitchell81
closed
6 months ago
0
Too long runtime for GoGAPS R
#96
LiuCanidk
closed
6 months ago
2
default number of patterns
#95
dimalvovs
opened
7 months ago
0
Bump version
#94
dimalvovs
closed
6 months ago
0
Update r-build-check.yml
#93
dimalvovs
closed
7 months ago
0
89 gsora and gsea.
#92
jmitchell81
closed
7 months ago
0
GSEA algorithms for the function getPatternHallmarks
#91
LiuCanidk
closed
6 months ago
9
Confusion on the parallelization of R CoGAPS
#90
LiuCanidk
closed
6 months ago
5
Replace Ensemble dependency and Add overrepresentation and enrichment tests for gene sets in patterns
#89
jmitchell81
closed
7 months ago
0
Error when performing getPatternHallmarks: Error in 'collect()'
#88
LiuCanidk
closed
7 months ago
9
Vignettes fail on querying ENSEMBL
#87
dimalvovs
closed
7 months ago
0
Standard deviation when running distributed
#86
dimalvovs
opened
8 months ago
0
Cpp tests
#85
dimalvovs
opened
8 months ago
2
83 limit number of cores for tests
#84
dimalvovs
closed
9 months ago
0
limit number of cores for tests
#83
dimalvovs
closed
9 months ago
1
enable sparse matrix support when input is object
#82
dimalvovs
closed
10 months ago
1
80 cache downloads for vignette
#81
dimalvovs
closed
10 months ago
0
Cache downloads for vignette
#80
dimalvovs
closed
10 months ago
0
Create r-build-check.yml
#79
dimalvovs
closed
10 months ago
1
change the way pattern name list is generated
#78
jeanettejohnson
closed
8 months ago
3
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