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```
1) What operating system are you using?
Scientific Linux 6.3
2) What error message was displayed?
*** caught segfault ***
address (nil), cause 'memory not mapped'
3) What was the exact command …
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- [ ] 1. Salmon/sleuth (Prereq: familiarity with HPC, bash and R)
- [x] 2. SRA/GEO data download (Prereq: familiarity with HPC and bash)
- [ ] 3. Sequence data QC (fastqc, multiqc, qualimap) (Prereq…
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I am working with on both Illumina-only and hybrid assemblies and plan to use Unicycler to perform the de novo assemblies. Do you recommend using a read correction program such as Trimmomatic to do qu…
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HI
I try to run it showing invalid syntax, Can you help me in building my own pipeline for genome analysis ?
****
Curium:~/test1mw/luigis_monkey_wrench$ python workflow_example.py --local-schedule…
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Tung tree (Vernicia fordii, Hemsl.) genome and transcriptome sequencing reveals coordinate upregulation of fatty acid beta-oxidation and triacylglycerol biosynthesis pathways during eleostearic acid…
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### Publication and Data Information
https://academic.oup.com/gigascience/article/8/5/giz036/5484800
### Additional Information
### Checklist
See [New Genome Documentation](https://github.com/…
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I have a homozygous plant sepceis (estimatic size 1.1G).
First, I run hifi read (33G) with hifiasm-0.16.1/hifiasm -o out.fasta -t 16 -l0 input.fasta. I get 1.8G p_ctg (N50 2.3M, not very good), 158…
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log:
```
2018-02-14 09:30:18,372 ERROR Command 'quantify /tmp/hap.py.result.jryogM.vcf.gz -o /mnt/yard2/ian/structural_variants/CHM1_CHM13_analysis/HG2.happy.roc.tsv -r /mnt/opt/refdata_new/hg1…
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Congrats, you have developed a pretty nice tool! I'm testing it with beast analysis using time stamped viral genomes. I was trying to set the tree scale axis to year and months like I do in Figtree ad…
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Please search ENA PUBLIC databases and find all the sequences related to the following two species:
At this point we would want the assemblies and reads data. List them with the all the related acce…