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Hi I am running a large dolphin feces nanopore sequencing fastq file and I am running into memory issues I think...
How much memory should I ask for to run this sample? Thanks! Katie
Canu v2.2
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Hi, oushujun, thank you for develop this great tool for genome repeat annotation. I want to use EDTA to annotate my genome and met an error.
I install EDTA v2.1.3 by mamba with following script ( I…
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Hi Gaetan,
Hope you've doing well since EBAME, I'm happy to see this tool gaining some attention.
I was wondering if you've formalized the maximum error rate tolerable by metaMDBG to function b…
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I noticed that there is not test data containing a full Minion run. Could you please fix this?
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### Working with FASTQC
In this assignment, you should gain a greater understanding of how sequence data is stored/formatted and how we assess the quality of our data.
## Learning Goals
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Dear Schulz Lab,
thank you for providing such an interesting tool.
No matter if I try to run the fusion detection or quantification tool with the downloaded references from ensembl, I get these …
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Hi, I am new to nanodisco and methylation profile analysis in general. I have come across the same issue multiple times while trying to perform methylation binning on a nanopore sequenced dataset comp…
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Hi everyone,
I have a question regarding the analysis of data derived from modkits. I am working with two sets of data (for the moment, a few samples): one concerning samples sequenced without PCR am…
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Dear Jared
I'm genotyping some fungi with nanopolish variants using a vcf file with known variants as --genotypes:
`python /path/to/software/nanopolish-0.9.2/nanopolish/scripts/nanopolish_makera…
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Is there a way we can get an output from the run showing things like which contigues were joined, etc. Also, is the analysis done with repeat masking and if not, how can we run it with repeat-masking?…