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Hello,
Maybe I have missed this somewhere but I am a bit confused on how multiple samples are handled in the pipeline or should be specified as input.
In my dataset I have 1 samples with nanopore …
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Hi,
Could you please clarify—to build a database, do I need both nt and aa seqs, or does metabuli translate nucleotides by itself? If it translates, can I specify the translation table?
And the …
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I am trying to find the best way to identify overlapping genes in my complete viruses extracted from metagenomes. I tried genotate hoping that it would identify them contrary to prodigal-gv and phanot…
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### Operating System
Other Linux (please specify below)
### Other Linux
x86_64 GNU/Linux
### Workflow Version
v2.9.4-gb12d893
### Workflow Execution
Command line (Local)
### Other workflow exe…
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Hi, this is part of the review for https://github.com/openjournals/joss-reviews/issues/6782
I was trying to follow the examples manually but I do not see any example data. I got confused by trying …
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### Description of bug
I cannot completed my spades operation because it says the files have unequal amount of reads. I have googled on how to solve the problem & some of them suggested using fastq-p…
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Hi there, so I implemented the pull request https://github.com/wasade/exhaustive/pull/3#issuecomment-1987242528 and ran the code on my dataset. It was successful, albeit very slow. I couldn't run it a…
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### Description of the bug
When I run the Docker profile using virtoprofiler, I run test data with the command/ Nextflow run deng lab/viroprofiler - r main - profile docker, test, but an error was re…
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### Description
When I run `pytest` without the `-x` option (i.e. when I add the following* to `docker-compose.test.yml` and then run `$ make up-test` followed by `$ make test`), **multiple tests f…
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> Would it be best to use the discarded reads for **this** or reads still present at the end of the Dada2 pipeline?
If "this" means the analysis I proposed above, ASVs refer to the ou…