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Hy,
I was trying for the first time the software however it is giving this error:
binette --extension fa --threads 10 --min_completeness 50 --outdir refined/ --contig2bin_tables genomes.stb --cont…
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Hi,
`stack exec -- vpf-class --data-index ../data/index.yaml -i ../data/test.fna -o test-classified`
I want to know how I can get the `index.yaml.`
Can I use the `index.yaml` from your provided …
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I am using chewBBACA for identifying cgMLST of species Staphylococcus pseudintermedius. Please let me know if I am able to get it using the database to get the cgMLST information of the species.
Th…
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Can you please provide some guidance on what version of MPI / gcc you've used to compile and run bison?
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**Is your feature request related to a problem? Please describe.**
Today it's routine for prod bioinfo to manually inspect the mip-dna cases in Scout, one part of this is to inspect the sample table …
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Hello, I am having a problem with X11 while running the test command.
I spent a lot of time trying, and I didn't have this problem with the other machine. There are always problems in the process o…
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-03-28 21:32:23]Computing intrinsic dimension to estimate k...
-03-28 21:32:23]Estimating lower bound of # archetype as 9...
30 components are retained using conditional_number=30.00
-03-28 21:32:5…
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Hey folks. OK, I have accepted reality and closed #442, giving up on the idea of a 4.2.1 fc 3 release, which was just causing confusion and difficulty. Here is a new issue to track release 4.2.2. T…
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Quickly test that circular view can be loaded in DMS with some existing VCFs with translocations
Resources provided by J-Browse and Bioinfo teams:
- http://schatz-lab.org/publications/SKBR3/ (see Va…
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Hello,
I have recently tried to parse my SQM project (coassembled) into anvi'o databases with the anvi-load-sqm.py script. My project is run with Squeezemeta 1.5 and anvi'o version is 7.1
Here i…