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I am trying to plot the values of V5 in my data:
plotAvgProf2(peak, weightCol="V5", TxDb=txdb, upstream=3000, downstream=3000)
where "peak" is the GRange object that looks like this:
GRanges object…
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Git recently added `--color-moved` support, to colour moved code: https://stackoverflow.com/a/48166435/463761
Would it be possible to add support for that in delta?
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## New lineage proposal
by Michael K. Edwards
### Description
Sub-lineage of: B.1.617.2
Earliest sequence: collected 2020-11-21
Most recent sequence: Now.
Countries circulating: Global.
I …
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Hi,
Thanks for developing this useful tools. I have PE reads with cell barcode and UMI on both read 1 and 2.
I was wondering if I should run cellular tag and molecular tag programs twice on read 1…
xmeng updated
3 years ago
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From: Rob Knight
Date: Thursday, March 18, 2021 at 4:36 PM
Subject: Re: Indel flag and Pangolin calls
[snip]
I think we are keeping the 95% threshold for making the phylogenetic trees that wi…
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Hi!
I just completed running syri on two closely related species with the following commends. The reference is already at the chromosome level. The query was scaffolded based on homology with ragt…
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I found a patent sequence (FV537213.1) in cov2.fa which is obviously non-biological (no Cs!) and causes problems for sequence search and comparison algorithms because it is low complexity. Perhaps we …
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Meeting note on Feb 26. 2021
1. DNA footprinting pipeline(shared by Shannon): http://www.regulatory-genomics.org/hint/introduction/
2. DNA footprinting paper (shared by Shannon): https://genomebiolo…
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this might simplify the catlas a lot.
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Hello,
1. What is the difference between reactions 1 and 2 in the following output pathway? I mean if an organism has GLY1 and ltaE and can perform the first reaction then why not the second one? …