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Heya,
I'm going to give this a whirl on a plant HiC assembly I have but I get the error message :
failed to re-allocate 131,158,140,720 bytes for 8,743,876,048 DP cells
Could you suggest what…
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Hi,
I had apparently very good results -still yet to verify them- scaffolding about 5000 large Pacbio contigs vs a 750MB genome with results inside 1-2 days.
I would like to scaffold ~200,000 much…
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Implement a GCV server at JCVI to provide A17 and R108 gene family data locally
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Found with @aviczhl2 's phylogenic tree analysis tool.
JN.1.7> C25416T> C25578T> C17750T(Orf1b:A1428V), T24304C> T22928C(S:F456L)
Query: C17750T, T22928C, T24304C
Earliest sequence: 05-11 Züric…
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Hello,
Is the WASP mapping pipeline suitable/recommended to be used on WGS data? I have followed some suggestions here to split some of the steps by chromosome since the files are large. However, f…
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Dear Prof. Wang,
I notice "hg38_gnomad_genome.txt" have multiple allele frequency in different population. I want to use this file to annotate my SNPs, however, I only want to show "gnomAD_genome_…
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Not sure how difficult it would be to add, but it might be nice to add a feature for circular reference genomes so it will map a single long-read across the linearization point. Not sure how it would …
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My Genome is a 700Mb plant genome, can I use this script to obtain GC content?
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Only make calls within the mask
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Sorry for this newbie post. I'm not a coder but an avid end-user. Perpetual issues have come up with polyploidization. Ploidy information and genome size are important traits for mapping on trees and …