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Hi,
I am using sortmerna to calculate coverage and abundance of reads from rRNA predictions (using MATAM) on the metagenomic libraries. However, the folders out and readb are always empty. Any reaso…
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Hi Daniel,
I am trying to carve around 3000 genomes I obtained from a complete metagenomics dataset.
I was able to carve most of them, but the last ~150 are giving me a hard time.
Below is the ou…
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I am trying to understand something about the pipeline in order to scale up and run it over 16 metagenomes for which we have illumina and nanopore data. I think I have two questions, one about initial…
drelo updated
5 months ago
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Dear Lucas,
I have been using your tool ‘Grenedalf’ for analysing pooled data, and I would like to first thank you for putting such a great tool together!
I work with pooled data (coming from sho…
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Hello
I am working with metagenomics data that was isolated from from plant under two different treatment.
I am using squeezemeta for the analysis and I want to further proceed with SQMtools for do…
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### Ask away!
Hi
Starting a new question as it is a different issue to the one I previously put this at the bottom of.
I have just updated EPI2ME to 5.1.10 but my workflow seems to be getting s…
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### Operating System
CentOS 7
### Other Linux
_No response_
### Workflow Version
v1.0.0
### Workflow Execution
Command line
### EPI2ME Version
_No response_
### CLI command run
nextflow run…
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Hello and thanks for the self-contained, all-in-one super tool!
I have generated a database using `phyloFlash_makedb.pl` based on 16S sequences extracted from genomes as follows:
```
phyloFlash…
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I am running into the exact same issue as previously posted and closed without comment, is there a fix for this, or any troubleshooting suggestions?
command: rgi bwt --local --read_one R1.fastq.gz --…
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Dear Benjamin,
I work with time series datasets of metagenomic data in several sites.
For each site, I have several runs.
I have a first question about what setting parameters to use in step to…