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Add support to other available linked-read plattforms:
- [x] ~~CPTv2~~ (Will not be added as no longer relevant)
- [x] stLFR=BGI linked reads
- [x] Tell-seq
- [ ] Haplotagging
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Hello,
I'm running into an error at the Deseq2 step, this is the error given deseq2.Rout:
```
./improve_deseq_table.rb:25:in `block in ': undefined method `[]' for nil:NilClass (NoMethodError)…
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I am setting up the AmpliconSuite-pipeline on our HPC for a prospective project. Would you be able to share the "benchmarking dataset with simulations" mentioned in your [manuscript](https://www.natur…
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### Data Owner Name
National Library of Medicine (NLM)
### Data Owner Country/Region
United States
### Data Owner Industry
Life Science / Healthcare
### Website
https://www.ncbi.n…
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Hello,
I was attempting to run `snakemake aberrantSplicing --cores 7` and I received the error (full error log attached):
**_Warning messages:
1: In DESeqDataSet(se, design = ~1, ...) :
all …
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Hello,
I am attempting to download RNA-seq read files from an approved access request through dbGaP using SRA Toolkit. I followed the install instructions for SRA Toolkit found here (https://githu…
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need to specify that it's necessary to set up ncbi tools before the download_SRA.sh script works
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Hello,
I am trying to work with RNA-seq data within an Amazon AWS instance. I've successfully launched an Ubuntu-based AMI and installed various pipeline tools, including Anaconda and SRA toolkit.
…
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### Checklist
- [X] I added a descriptive title
- [X] I searched open reports and couldn't find a duplicate
### What happened?
Dear All,
I'm trying to install some libraries using Conda,
but ever…
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https://mp.weixin.qq.com/s/G-53DHGOxhJaz5u9QEuZjA
ixxmu updated
11 months ago