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When I run gtdbtk classify_wf, it error message below:
```
[2018-03-07 10:42:06] INFO: GTDB-Tk v0.0.3
[2018-03-07 10:42:06] INFO: gtdbtk classify_wf --genome_dir ./test1/ --out_dir gtdbtk_outdir -x…
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we only have one MAPK scaffold annotated
which probably has below threshold C2 and PH domain protein.
http://pfam.xfam.org/family/PF08578#tabview=tab1
PH domains are involved in signalling …
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Results of prove -I src/perl5 -lr tests/ on Ubuntu 14 with perl 5.18.2
```
tests/perl_tests/00.compile.t .............. ok
tests/perl_tests/add-json.pl.t ............. ok
# using temp dir /tmp…
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Hi Ian,
Some of gene families that are of particular interest to me are, unfortunately, not well annotated by Augustus if run in de novo or cgp mode. However, I can get relatively good predictions…
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Update the following URL to point to the GitHub repository of
the package you wish to submit to _Bioconductor_
- Repository: https://github.com/sysbiomed/glmSparseNet
Confirm the following by e…
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It looks like there isn't a protein annotated as the cell is black for Borrelia japonica strain ATCC 51557, and when I downloaded the heatmap, it had a value of NaN. So I clicked on the cell to see t…
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From my genome group (but I also did it from the genus Bartonella), I tried to use the filtering function at the bottom of the filter. First, I could see that there were protein families that met the…
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I propose to change all instances of 'protein clusters' in our pangenomic workflow with 'gene clusters'.
## Summary of the discussions so far
_I will keep this section up-to-date, the original i…
meren updated
6 years ago
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I am trying to run low-level interface approach to perform ParalogMatching. At last step, while writing an output file I get an error like as follows:
"Closest candidates are:
write_fasta_match(::…
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SPBC776.06c | Arf3/6 docking factor (predicted)
slf1 | SPAC821.03c | cell cortex node protein Slf1
tea3 | SPAC6G10.02c | cell end marker Tea3
num1 | SPBC216.02 | cortical anchoring factor for dyn…