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Regarding checkqc version: 4.0.1 build 0
Hi!
I need some help with troubleshooting the docker image created for checkqc. When trying to use it, I get the following error when trying to process a…
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Maybe based on Unicycler after mapping reads to reference
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I´m trying to normalize my data from an EPIC array.
The SWAN normalization works fine.
When trying the "illumina" method I always get this warning: Incompatible dataset and normalization method: not…
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Hi,
Thank you for developing BrownieCorrector- I am grateful that you are addressing the issue of poly-nucleotide stretches in Illumina data and am excited to try the software.
When I tried a qu…
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editor preferred term: Clone-seq
textual definition: A massively-parallel site-directed mutagenesis approach leveraging next-generation sequencing to rapidly and cost-effectively generate a large num…
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Dear Mahul, I intend to use SVMU for calling variants between a reference and a newly sequenced strain of Drosophila. I have the contigs and also a scaffolded assembly for the same built from Illumina…
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In the current implementation, we are losing the track between an ID (column ID from the VCF) and its file. This is not a problem when the ID has a _rs_ , but in case of containing other internal Ids …
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### Description of bug
Hi,
I am trying to run coronaSPAdes on a sample we are interested in.
Initially I had only Illumina single-end reads available. The original FASTQ was first mapped to SAR…
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Project: ENCODE
So - we are working with a new High Throughput Sequencing Assay: icSHAPE, that captures RNA secondary structure.
NTR: "icSHAPE"
Editor preferred term: "icSHAPE"
Alternative…