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**Background**:
[Genome Nexus](https://www.genomenexus.org/) [1] is a tool for the annotation and interpretation of mutations in cancer. [cBioPortal](https://cbioportal.org) leverages Genome Nexus' …
inodb updated
4 months ago
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For metaG preps:
- Prep file
- Sample info file from prep
- ko.biom
- ec.biom
- none.biom (per genome)
- per-gene.biom
- pathway.biom
- Cell counts.biom
For metaT:
- Prep file
- Sample in…
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### Main steps for adding new genome and annotation collections
# Genus/species/collection names:
- Acacia/crassicarpa/genomes/Acra3RX.gnm1.YX4L
- Acacia/crassicarpa/annotations/Acra3RX.gnm1.ann…
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Dear Ploidetect developers,
I am currently benchmarking Ploidetect v1.4.2 on matched tumour-normal hg38 ONT data in order to check how it compares against other CNV callers for potential use in an …
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Discussion and use case
https://help.galaxyproject.org/t/no-link-for-ucsc-to-visualise-datasets/12260/
From UCSC. This would either be in addition to the ucsc.builds.txt
You will also need all ge…
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JN.1+C25566T+C4570T,C6941T+T21738C(S:F59S)
GISAID query: T21738C, C4570T,C6941T
No. of seqs: 22(China 21(Anhui, Henan, Heilongjiang, Fujian, Liaoning, Hubei) Denmark 1)
First: EPI_ISL_18857569,…
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Motivated by https://github.com/nextstrain/pathogen-repo-guide/issues/50:
> It seems like a common pattern for sequencing efforts to focus on specific genes instead of the full genome. It would be…
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Hi,
I installed genome-seek through conda:
```
mamba create -c conda-forge -c bioconda -p /mycondaEnv/snakemake_singularity snakemake singularity
git clone https://github.com/OpenOmics/genome-…
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Hi,
I am in charge to find presence of specific genes in 600.000 Salmonella's genomes.
I used COBS on few genomes for training
But I don't really understand the output...
I copied a subsequence (5…
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We are trying to add support for multiple genomes as to start this project was only working for human GRCh38.
Work has been done at the loading step on Apr 5, 2022 to support on top of human GRCh38…